Mario Stanke
Title
Cited by
Cited by
Year
Gene prediction with a hidden Markov model and a new intron submodel
M Stanke, S Waack
Bioinformatics 19 (suppl_2), ii215-ii225, 2003
11702003
Genome sequence of Aedes aegypti, a major arbovirus vector
V Nene, JR Wortman, D Lawson, B Haas, C Kodira, ZJ Tu, B Loftus, Z Xi, ...
Science 316 (5832), 1718-1723, 2007
11572007
The genome of the blood fluke Schistosoma mansoni
M Berriman, BJ Haas, PT LoVerde, RA Wilson, GP Dillon, GC Cerqueira, ...
Nature 460 (7253), 352-358, 2009
10732009
AUGUSTUS: ab initio prediction of alternative transcripts
M Stanke, O Keller, I Gunduz, A Hayes, S Waack, B Morgenstern
Nucleic acids research 34 (suppl_2), W435-W439, 2006
9552006
The Amphimedon queenslandica genome and the evolution of animal complexity
M Srivastava, O Simakov, J Chapman, B Fahey, MEA Gauthier, T Mitros, ...
Nature 466 (7307), 720-726, 2010
9402010
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
M Stanke, M Diekhans, R Baertsch, D Haussler
Bioinformatics 24 (5), 637-644, 2008
9362008
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
M Stanke, B Morgenstern
Nucleic acids research 33 (suppl_2), W465-W467, 2005
8512005
AUGUSTUS: a web server for gene finding in eukaryotes
M Stanke, R Steinkamp, S Waack, B Morgenstern
Nucleic acids research 32 (suppl_2), W309-W312, 2004
8462004
Genome sequence of the pea aphid Acyrthosiphon pisum
International Aphid Genomics Consortium
PLOS biol 8 (2), e1000313, 2010
8092010
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
M Stanke, O Schöffmann, B Morgenstern, S Waack
BMC bioinformatics 7 (1), 1-11, 2006
7032006
Draft genome of the filarial nematode parasite Brugia malayi
E Ghedin, S Wang, D Spiro, E Caler, Q Zhao, J Crabtree, JE Allen, ...
Science 317 (5845), 1756-1760, 2007
6522007
The UCSC genome browser database: 2008 update
D Karolchik, RM Kuhn, R Baertsch, GP Barber, H Clawson, M Diekhans, ...
Nucleic acids research 36 (suppl_1), D773-D779, 2007
5762007
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
5462013
BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS
KJ Hoff, S Lange, A Lomsadze, M Borodovsky, M Stanke
Bioinformatics 32 (5), 767-769, 2016
5402016
Draft genome sequence of the oilseed species Ricinus communis
AP Chan, J Crabtree, Q Zhao, H Lorenzi, J Orvis, D Puiu, ...
Nature biotechnology 28 (9), 951-956, 2010
4832010
Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics
P Arensburger, K Megy, RM Waterhouse, J Abrudan, P Amedeo, B Antelo, ...
Science 330 (6000), 86-88, 2010
4552010
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
JE Stajich, SK Wilke, D Ahrén, CH Au, BW Birren, M Borodovsky, C Burns, ...
Proceedings of the National Academy of Sciences 107 (26), 11889-11894, 2010
3882010
Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote
G Schönknecht, WH Chen, CM Ternes, GG Barbier, RP Shrestha, ...
Science 339 (6124), 1207-1210, 2013
3542013
The UCSC genome browser database: update 2007
RM Kuhn, D Karolchik, AS Zweig, H Trumbower, DJ Thomas, ...
Nucleic acids research 35 (suppl_1), D668-D673, 2007
3392007
Finding the missing honey bee genes: lessons learned from a genome upgrade
CG Elsik, KC Worley, AK Bennett, M Beye, F Camara, CP Childers, ...
BMC genomics 15 (1), 1-29, 2014
3132014
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Articles 1–20