| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 455* | 2020 |
| RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus RHJ Staals, Y Zhu, DW Taylor, JE Kornfeld, K Sharma, A Barendregt, ... Molecular cell 56 (4), 518-530, 2014 | 356 | 2014 |
| Reverse methanogenesis and respiration in methanotrophic archaea PHA Timmers, CU Welte, JJ Koehorst, CM Plugge, MSM Jetten, ... Archaea 2017 (1), 1654237, 2017 | 353 | 2017 |
| Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus RHJ Staals, Y Agari, S Maki-Yonekura, Y Zhu, DW Taylor, E Van Duijn, ... Molecular cell 52 (1), 135-145, 2013 | 291 | 2013 |
| NG-Tax 2.0: a semantic framework for high-throughput amplicon analysis W Poncheewin, GDA Hermes, JCJ Van Dam, JJ Koehorst, H Smidt, ... Frontiers in Genetics 10, 1366, 2020 | 113 | 2020 |
| A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities P Worm, JJ Koehorst, M Visser, VT Sedano-Núñez, PJ Schaap, ... Biochimica et Biophysica Acta (BBA)-Bioenergetics 1837 (12), 2004-2016, 2014 | 110 | 2014 |
| Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata SH Kazakoff, M Imelfort, D Edwards, J Koehorst, B Biswas, J Batley, ... PLoS One 7 (12), e51687, 2012 | 85 | 2012 |
| Differential translation tunes uneven production of operon-encoded proteins TEF Quax, YI Wolf, JJ Koehorst, O Wurtzel, R van der Oost, W Ran, ... Cell reports 4 (5), 938-944, 2013 | 84 | 2013 |
| Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data JJ Koehorst, JCJ Van Dam, RGA Van Heck, E Saccenti, ... Scientific reports 6 (1), 38699, 2016 | 66 | 2016 |
| A chromosome‐level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth‐associated genes T Uengwetwanit, W Pootakham, I Nookaew, C Sonthirod, P Angthong, ... Molecular ecology resources 21 (5), 1620-1640, 2021 | 63 | 2021 |
| SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles JJ Koehorst, JCJ van Dam, E Saccenti, VAP Martins dos Santos, ... Bioinformatics 34 (8), 1401-1403, 2018 | 56 | 2018 |
| Effects of Argonaute on gene expression in Thermus thermophilus DC Swarts, JJ Koehorst, ER Westra, PJ Schaap, J van der Oost PloS one 10 (4), e0124880, 2015 | 55 | 2015 |
| Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids from syngas M Diender, I Parera Olm, M Gelderloos, JJ Koehorst, PJ Schaap, ... Scientific Reports 9 (1), 18081, 2019 | 53 | 2019 |
| Comparative genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice A Fiebig, TG Loof, A Babbar, A Itzek, JJ Koehorst, PJ Schaap, ... International Journal of Medical Microbiology 305 (6), 532-543, 2015 | 36 | 2015 |
| A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses A Waagmeester, EL Willighagen, AI Su, M Kutmon, JEL Gayo, ... BMC biology 19 (1), 1-14, 2021 | 35* | 2021 |
| Organohalide-respiring Desulfoluna species isolated from marine environments P Peng, T Goris, Y Lu, B Nijsse, A Burrichter, D Schleheck, JJ Koehorst, ... The ISME Journal 14 (3), 815-827, 2020 | 32 | 2020 |
| A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration LFC Kampers, JJ Koehorst, RJA van Heck, M Suarez-Diez, AJM Stams, ... BMC microbiology 21, 1-15, 2021 | 31 | 2021 |
| Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum … M Visser, SN Parshina, JI Alves, DZ Sousa, IAC Pereira, G Muyzer, ... Standards in genomic sciences 9, 655-675, 2014 | 31 | 2014 |
| Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics JJ Koehorst, E Saccenti, PJ Schaap, VAPM Dos Santos, M Suarez-Diez F1000Research 5, 1987, 2017 | 30 | 2017 |
| RAF-like protein kinases mediate a deeply conserved, rapid auxin response A Kuhn, M Roosjen, S Mutte, SM Dubey, VPC Carrasco, S Boeren, ... Cell 187 (1), 130-148. e17, 2024 | 29 | 2024 |
PJ SchaapAssociate professor, Systems and Synthetic Biology, Wageningen University, The NetherlandsVerified email at wur.nl
