Jasper J. Koehorst
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MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus
RHJ Staals, Y Zhu, DW Taylor, JE Kornfeld, K Sharma, A Barendregt, ...
Molecular cell 56 (4), 518-530, 2014
Reverse methanogenesis and respiration in methanotrophic archaea
PHA Timmers, CU Welte, JJ Koehorst, CM Plugge, MSM Jetten, ...
Archaea 2017 (1), 1654237, 2017
Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus
RHJ Staals, Y Agari, S Maki-Yonekura, Y Zhu, DW Taylor, E Van Duijn, ...
Molecular cell 52 (1), 135-145, 2013
A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities
P Worm, JJ Koehorst, M Visser, VT Sedano-Núñez, PJ Schaap, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1837 (12), 2004-2016, 2014
NG-Tax 2.0: a semantic framework for high-throughput amplicon analysis
W Poncheewin, GDA Hermes, JCJ Van Dam, JJ Koehorst, H Smidt, ...
Frontiers in Genetics 10, 458455, 2020
Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata
SH Kazakoff, M Imelfort, D Edwards, J Koehorst, B Biswas, J Batley, ...
PLoS One 7 (12), e51687, 2012
Differential translation tunes uneven production of operon-encoded proteins
TEF Quax, YI Wolf, JJ Koehorst, O Wurtzel, R van der Oost, W Ran, ...
Cell reports 4 (5), 938-944, 2013
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
JJ Koehorst, JCJ Van Dam, RGA Van Heck, E Saccenti, ...
Scientific reports 6 (1), 38699, 2016
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
JJ Koehorst, JCJ van Dam, E Saccenti, VAP Martins dos Santos, ...
Bioinformatics 34 (8), 1401-1403, 2018
A chromosome‐level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth‐associated genes
T Uengwetwanit, W Pootakham, I Nookaew, C Sonthirod, P Angthong, ...
Molecular ecology resources 21 (5), 1620-1640, 2021
Effects of Argonaute on gene expression in Thermus thermophilus
DC Swarts, JJ Koehorst, ER Westra, PJ Schaap, J van der Oost
PloS one 10 (4), e0124880, 2015
Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids from syngas
M Diender, I Parera Olm, M Gelderloos, JJ Koehorst, PJ Schaap, ...
Scientific Reports 9 (1), 18081, 2019
Comparative genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice
A Fiebig, TG Loof, A Babbar, A Itzek, JJ Koehorst, PJ Schaap, ...
International Journal of Medical Microbiology 305 (6), 532-543, 2015
A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
A Waagmeester, EL Willighagen, AI Su, M Kutmon, JEL Gayo, ...
BMC biology 19 (1), 1-14, 2021
Organohalide-respiring Desulfoluna species isolated from marine environments
P Peng, T Goris, Y Lu, B Nijsse, A Burrichter, D Schleheck, JJ Koehorst, ...
The ISME Journal 14 (3), 815-827, 2020
Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
JJ Koehorst, E Saccenti, PJ Schaap, VAPM Dos Santos, M Suarez-Diez
F1000Research 5, 2016
Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum …
M Visser, SN Parshina, JI Alves, DZ Sousa, IAC Pereira, G Muyzer, ...
Standards in genomic sciences 9, 655-675, 2014
A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration
LFC Kampers, JJ Koehorst, RJA van Heck, M Suarez-Diez, AJM Stams, ...
BMC microbiology 21, 1-15, 2021
Time-dependent transcriptome profile of genes involved in triacylglycerol (TAG) and polyunsaturated fatty acid synthesis in Nannochloropsis gaditana during …
JH Janssen, J Spoelder, JJ Koehorst, PJ Schaap, RH Wijffels, ...
Journal of applied phycology 32, 1153-1164, 2020
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Articles 1–20