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Jasper J. Koehorst
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MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
398*2020
RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus
RHJ Staals, Y Zhu, DW Taylor, JE Kornfeld, K Sharma, A Barendregt, ...
Molecular cell 56 (4), 518-530, 2014
3412014
Reverse methanogenesis and respiration in methanotrophic archaea
PHA Timmers, CU Welte, JJ Koehorst, CM Plugge, MSM Jetten, ...
Archaea 2017 (1), 1654237, 2017
3292017
Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus
RHJ Staals, Y Agari, S Maki-Yonekura, Y Zhu, DW Taylor, E Van Duijn, ...
Molecular cell 52 (1), 135-145, 2013
2852013
A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities
P Worm, JJ Koehorst, M Visser, VT Sedano-Núñez, PJ Schaap, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1837 (12), 2004-2016, 2014
1062014
NG-Tax 2.0: a semantic framework for high-throughput amplicon analysis
W Poncheewin, GDA Hermes, JCJ Van Dam, JJ Koehorst, H Smidt, ...
Frontiers in Genetics 10, 458455, 2020
1042020
Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata
SH Kazakoff, M Imelfort, D Edwards, J Koehorst, B Biswas, J Batley, ...
PLoS One 7 (12), e51687, 2012
832012
Differential translation tunes uneven production of operon-encoded proteins
TEF Quax, YI Wolf, JJ Koehorst, O Wurtzel, R van der Oost, W Ran, ...
Cell reports 4 (5), 938-944, 2013
822013
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
JJ Koehorst, JCJ Van Dam, RGA Van Heck, E Saccenti, ...
Scientific reports 6 (1), 38699, 2016
622016
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
JJ Koehorst, JCJ van Dam, E Saccenti, VAP Martins dos Santos, ...
Bioinformatics 34 (8), 1401-1403, 2018
552018
A chromosome‐level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth‐associated genes
T Uengwetwanit, W Pootakham, I Nookaew, C Sonthirod, P Angthong, ...
Molecular ecology resources 21 (5), 1620-1640, 2021
542021
Effects of Argonaute on gene expression in Thermus thermophilus
DC Swarts, JJ Koehorst, ER Westra, PJ Schaap, J van der Oost
PloS one 10 (4), e0124880, 2015
512015
Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids from syngas
M Diender, I Parera Olm, M Gelderloos, JJ Koehorst, PJ Schaap, ...
Scientific Reports 9 (1), 18081, 2019
422019
Comparative genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice
A Fiebig, TG Loof, A Babbar, A Itzek, JJ Koehorst, PJ Schaap, ...
International Journal of Medical Microbiology 305 (6), 532-543, 2015
362015
A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
A Waagmeester, EL Willighagen, AI Su, M Kutmon, JEL Gayo, ...
BMC biology 19 (1), 1-14, 2021
35*2021
Organohalide-respiring Desulfoluna species isolated from marine environments
P Peng, T Goris, Y Lu, B Nijsse, A Burrichter, D Schleheck, JJ Koehorst, ...
The ISME Journal 14 (3), 815-827, 2020
302020
Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
JJ Koehorst, E Saccenti, PJ Schaap, VAPM Dos Santos, M Suarez-Diez
F1000Research 5, 2016
302016
Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum …
M Visser, SN Parshina, JI Alves, DZ Sousa, IAC Pereira, G Muyzer, ...
Standards in genomic sciences 9, 655-675, 2014
28*2014
A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration
LFC Kampers, JJ Koehorst, RJA van Heck, M Suarez-Diez, AJM Stams, ...
BMC microbiology 21, 1-15, 2021
252021
Time-dependent transcriptome profile of genes involved in triacylglycerol (TAG) and polyunsaturated fatty acid synthesis in Nannochloropsis gaditana during …
JH Janssen, J Spoelder, JJ Koehorst, PJ Schaap, RH Wijffels, ...
Journal of applied phycology 32, 1153-1164, 2020
242020
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Articles 1–20