| Investigating Chaperonin-Containing TCP-1 subunit 2 as an essential component of the chaperonin complex for tumorigenesis AE Showalter, AC Martini, D Nierenberg, K Hosang, NA Fahmi, ... Scientific reports 10 (1), 798, 2020 | 42 | 2020 |
| Pim-assembler: A processing-in-memory platform for genome assembly S Angizi, NA Fahmi, W Zhang, D Fan 2020 57th ACM/IEEE design automation conference (DAC), 1-6, 2020 | 28 | 2020 |
| mTOR-regulated U2af1 tandem exon splicing specifies transcriptome features for translational control JW Chang, HS Yeh, M Park, L Erber, J Sun, S Cheng, AM Bui, NA Fahmi, ... Nucleic acids research 47 (19), 10373-10387, 2019 | 16 | 2019 |
| Transcriptional programming drives Ibrutinib-resistance evolution in mantle cell lymphoma X Zhao, MY Wang, H Jiang, T Lwin, PM Park, J Gao, MB Meads, Y Ren, ... Cell reports 34 (11), 2021 | 14 | 2021 |
| As-quant: Detection and visualization of alternative splicing events with rna-seq data NA Fahmi, H Nassereddeen, J Chang, M Park, H Yeh, J Sun, D Fan, ... International journal of molecular sciences 22 (9), 4468, 2021 | 11 | 2021 |
| Pim-quantifier: A processing-in-memory platform for mrna quantification F Zhang, S Angizi, NA Fahmi, W Zhang, D Fan 2021 58th ACM/IEEE Design Automation Conference (DAC), 43-48, 2021 | 8 | 2021 |
| APA-Scan: Detection and Visualization of 3’-UTR APA with RNA-seq and 3’-end-seq Data NA Fahmi, JW Chang, H Nassereddeen, KT Ahmed, D Fan, J Yong, ... BioRxiv, 2020 | 6 | 2020 |
| Computational methods to study human transcript variants in COVID-19 infected lung cancer cells J Sun, NA Fahmi, H Nassereddeen, S Cheng, I Martinez, D Fan, J Yong, ... International journal of molecular sciences 22 (18), 9684, 2021 | 5 | 2021 |
| APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data NA Fahmi, KT Ahmed, JW Chang, H Nassereddeen, D Fan, J Yong, ... BMC bioinformatics 23 (Suppl 3), 396, 2022 | 4 | 2022 |
| mTOR contributes to the proteome diversity through transcriptome-wide alternative splicing S Cheng, NA Fahmi, M Park, J Sun, K Thao, HS Yeh, W Zhang, J Yong International journal of molecular sciences 23 (20), 12416, 2022 | 2 | 2022 |
| 53BP1-ACLY-SLBP-coordinated activation of replication-dependent histone biogenesis maintains genomic integrity TT Wu, S Jun, EJ Choi, J Sun, EB Yang, HS Lee, SY Kim, NA Fahmi, ... Nucleic acids research 50 (3), 1465-1483, 2022 | 1 | 2022 |
| PANDA: Processing-in-MRAM Accelerated De Bruijn Graph based DNA Assembly S Angizi, NA Fahmi, W Zhang, D Fan arXiv preprint arXiv:2008.06177, 2020 | 1 | 2020 |
| mTOR-driven widespread exon skipping renders multifaceted gene regulation and proteome complexity S Cheng, NA Fahmi, M Park, JW Chang, J Sun, K Thao, HS Yeh, W Zhang, ... bioRxiv, 2020.02. 27.967737, 2020 | 1 | 2020 |
| PANDA: Processing in Magnetic Random-Access Memory-Accelerated de Bruijn Graph-Based DNA Assembly S Angizi, NA Fahmi, D Najafi, W Zhang, D Fan Journal of Low Power Electronics and Applications 14 (1), 9, 2024 | | 2024 |
