Thomas Kelder
Thomas Kelder
CSO, EdgeLeap, The Netherlands
Verified email at edgeleap.com - Homepage
TitleCited byYear
WikiPathways: pathway editing for the people
AR Pico, T Kelder, MP Van Iersel, K Hanspers, BR Conklin, C Evelo
PLoS biology 6 (7), e184, 2008
4972008
WikiPathways: building research communities on biological pathways
T Kelder, MP van Iersel, K Hanspers, M Kutmon, BR Conklin, CT Evelo, ...
Nucleic acids research 40 (D1), D1301-D1307, 2011
4422011
Presenting and exploring biological pathways with PathVisio
MP van Iersel, T Kelder, AR Pico, K Hanspers, S Coort, BR Conklin, ...
BMC bioinformatics 9 (1), 399, 2008
3202008
Time-resolved and tissue-specific systems analysis of the pathogenesis of insulin resistance
R Kleemann, M Van Erk, L Verschuren, AM Van Den Hoek, M Koek, ...
PloS one 5 (1), e8817, 2010
1402010
PathVisio 3: an extendable pathway analysis toolbox
M Kutmon, MP van Iersel, A Bohler, T Kelder, N Nunes, AR Pico, CT Evelo
PLoS computational biology 11 (2), e1004085, 2015
1262015
Mining biological pathways using WikiPathways web services
T Kelder, AR Pico, K Hanspers, MP Van Iersel, C Evelo, BR Conklin
PloS one 4 (7), e6447, 2009
1122009
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services
MP van Iersel, AR Pico, T Kelder, J Gao, I Ho, K Hanspers, BR Conklin, ...
BMC bioinformatics 11 (1), 5, 2010
1072010
A combined transcriptomics and lipidomics analysis of subcutaneous, epididymal and mesenteric adipose tissue reveals marked functional differences
R Caesar, M Manieri, T Kelder, M Boekschoten, C Evelo, M Müller, ...
PLoS one 5 (7), e11525, 2010
792010
CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis
M Kutmon, T Kelder, P Mandaviya, CTA Evelo, SL Coort
PloS one 8 (12), e82160, 2013
742013
Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets
T Kelder, BR Conklin, CT Evelo, AR Pico
PLoS biology 8 (8), e1000472, 2010
502010
Correlation network analysis reveals relationships between diet-induced changes in human gut microbiota and metabolic health
T Kelder, JHM Stroeve, S Bijlsma, M Radonjic, G Roeselers
Nutrition & diabetes 4 (6), e122, 2014
472014
Eu. Gene Analyzer a tool for integrating gene expression data with pathway databases
D Cavalieri, C Castagnini, S Toti, K Maciag, T Kelder, L Gambineri, ...
Bioinformatics 23 (19), 2631-2632, 2007
432007
The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation
M Baccini, EM Bachmaier, A Biggeri, MV Boekschoten, FG Bouwman, ...
Genes & nutrition 3 (3), 147, 2008
302008
Alperujo extract, hydroxytyrosol, and 3, 4‐dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin E‐deficient rats—a proteomics and network analysis …
G Rodríguez‐Gutiérrez, GG Duthie, S Wood, P Morrice, F Nicol, M Reid, ...
Molecular nutrition & food research 56 (7), 1131-1147, 2012
242012
Differential effects of drug interventions and dietary lifestyle in developing type 2 diabetes and complications: a systems biology analysis in LDLr−/− mice
M Radonjic, PY Wielinga, S Wopereis, T Kelder, VS Goelela, ...
PLoS one 8 (2), e56122, 2013
232013
The emerging world of wikis
JC Hu, R Aramayo, D Bolser, T Conway, CG Elsik, M Gribskov, T Kelder, ...
Science 320 (5881), 1289, 2008
232008
Coordinated and interactive expression of genes of lipid metabolism and inflammation in adipose tissue and liver during metabolic overload
W Liang, G Tonini, P Mulder, T Kelder, M van Erk, AM van den Hoek, ...
PloS one 8 (9), e75290, 2013
212013
Exploring pathway interactions in insulin resistant mouse liver
T Kelder, L Eijssen, R Kleemann, M van Erk, T Kooistra, C Evelo
BMC systems biology 5 (1), 127, 2011
152011
Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia
A Wagner, N Cohen, T Kelder, U Amit, E Liebman, DM Steinberg, ...
Molecular systems biology 11 (3), 791, 2015
142015
Systems biology analysis unravels the complementary action of combined rosuvastatin and ezetimibe therapy
L Verschuren, M Radonjic, PY Wielinga, T Kelder, T Kooistra, ...
Pharmacogenetics and genomics 22 (12), 837-845, 2012
132012
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