Denise Slenter

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Egon WillighagenTGX, NUTRIM, Maastricht University/NL, ORCID:0000-0001-7542-0286, https://social.edu.nl/@egonwVerified email at maastrichtuniversity.nl
Chris EveloHead Department of Bioinformatics - BiGCaT, Maastricht University ORCID:0000-0002-5301-3142Verified email at maastrichtuniversity.nl
Martina KutmonAssistant professor, Maastricht University, The NetherlandsVerified email at maastrichtuniversity.nl
Friederike EhrhartAssistant professor, Maastricht UniversityVerified email at maastrichtuniversity.nl
Andra WaagmeesterMicelio bvbaVerified email at micelio.be
Marvin MartensPostDoctoral Researcher, Maastricht UniversityVerified email at maastrichtuniversity.nl
Alexander R PicoGladstone InstitutesVerified email at gladstone.ucsf.edu
Kristina HanspersGladstone InstitutesVerified email at gladstone.ucsf.edu
Ryan A. MillerMaastricht UniversityVerified email at maastrichtuniversity.nl
Anders RiuttaInstitute for Data Science and Biotechnology, Gladstone InstitutesVerified email at andersriutta.com
Lars EijssenMaastricht UniversityVerified email at maastrichtuniversity.nl
Elisson LopesPostdoc at Van Andel InstituteVerified email at vai.org
Ammar AmmarMaastricht UniversityVerified email at maastrichtuniversity.nl
Linda RieswijkMaastricht Institute of Data ScienceVerified email at maastrichtuniversity.nl
Dr. Susan Steinbusch-CoortAssociate Professor, dept of Bionformatics-BiGCaT, NUTRIM, Maastricht University, NLVerified email at maastrichtuniversity.nl
Jacob WindsorVerified email at jcbwndsr.com
Elisa CirilloVerified email at maastrichtuniversity.nl
Nuno NunesInvestigadorVerified email at staff.uma.pt
Lauren DupuisPost Doc at Maastricht University Department of BioinformaticsVerified email at maastrichtuniversity.nl
Nick LaanPhD Student, University of AmsterdamVerified email at rechtspraak.nl

Denise Slenter

PostDoctoral Researcher, Translational Genomics, Maastricht University

Verified email at maastrichtuniversity.nl - Homepage

Metabolites metabolomics idenfifier mapping chemistry bioinformatics


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WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research DN Slenter, M Kutmon, K Hanspers, A Riutta, J Windsor, N Nunes, ... Nucleic acids research 46 (D1), D661-D667, 2018	955	2018
WikiPathways: connecting communities M Martens, A Ammar, A Riutta, A Waagmeester, DN Slenter, K Hanspers, ... Nucleic Acids Research 49 (D1), D613-D621, 2021	698	2021
Wikidata as a knowledge graph for the life sciences A Waagmeester, G Stupp, S Burgstaller-Muehlbacher, BM Good, M Griffith, ... Elife 9, e52614, 2020	134	2020
Bloodstain pattern analysis: implementation of a fluid dynamic model for position determination of victims N Laan, KG de Bruin, D Slenter, J Wilhelm, M Jermy, D Bonn Scientific reports 5 (1), 11461, 2015	102	2015
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021	90	2021
Guiding the choice of informatics software and tools for lipidomics research applications Z Ni, M Wölk, G Jukes, K Mendivelso Espinosa, R Ahrends, L Aimo, ... Nature methods 20 (2), 193-204, 2023	44	2023
Ten simple rules for creating reusable pathway models for computational analysis and visualization K Hanspers, M Kutmon, SL Coort, D Digles, LJ Dupuis, F Ehrhart, F Hu, ... PLOS Computational Biology 17 (8), e1009226, 2021	15	2021
Beyond pathway analysis: Identification of active subnetworks in Rett syndrome RA Miller, F Ehrhart, LMT Eijssen, DN Slenter, LMG Curfs, CT Evelo, ... Frontiers in genetics 10, 59, 2019	14	2019
Interpreting the lipidome: bioinformatic approaches to embrace the complexity JE Kyle, L Aimo, AJ Bridge, G Clair, M Fedorova, JB Helms, MR Molenaar, ... Metabolomics 17, 1-10, 2021	13	2021
Research Techniques Made Simple: Lipidomic Analysis in Skin Research M Sochorová, K Vávrová, M Fedorova, Z Ni, D Slenter, M Kutmon, ... Journal of Investigative Dermatology 142 (1), 4-11. e1, 2022	9	2022
Knowledge graphs and wikidata subsetting JE Labra-Gayo, AG Hevia, DF Álvarez, A Ammar, D Brickley, AJG Gray, ... BioHackrXiv, 2021	4	2021
Wikidata and Scholia as a hub linking chemical knowledge E Willighagen, D Slenter, D Mietchen, C Evelo, F Nielsen 11th International Conference on Chemical Structures. Program & Abstracts 146, 2018	4	2018
WikiPathways: Integrating Pathway Knowledge with Clinical Data DN Slenter, M Kutmon, EL Willighagen Physician's Guide to the Diagnosis, Treatment, and Follow-Up of Inherited …, 2022	2	2022
BridgeDb and Wikidata: a powerful combination generating interoperable open research (BridgeDb) E Willighagen, M Kutmon, M Martens, D Slenter Research Ideas and Outcomes 8, e83031, 2022	1	2022
Extending inherited metabolic disorder diagnostics with biomarker interaction visualizations DN Slenter, IMGM Hemel, CT Evelo, J Bierau, EL Willighagen, ... Orphanet Journal of Rare Diseases 18 (1), 95, 2023		2023
Discovering life’s directed metabolic (sub)paths to interpret biochemical markers using the DSMN ELW Denise Slenter, M. Kutmon ,Chris T. Evelo ChemRxiv, 2022		2022
A Systems Biology Workflow to Support the Diagnosis of Pyrimidine and Urea Cycle Disorders DN Slenter, IMGM Hemel, CT Evelo, J Bierau, EL Willighagen, ... medRxiv, 2022.01. 31.21265847, 2022		2022
COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021) M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular Systems Biology, 2-2, 2021		2021
LINKING GENOTYPE TO PHENOTYPE BY BIOLOGICAL PATHWAYS F Ehrhart, DN Slenter, NB Sangani, EL Willighagen, LMG Curfs, CT Evelo JOURNAL OF INTELLECTUAL DISABILITY RESEARCH 63 (9), 1080-1081, 2019		2019
Open chemistry registry and mapping platform based on open source cheminformatics toolkits V Tkachenko, D Slenter, N Jeliazkova, A Gaulton, A Williams, C Steinbeck, ... ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017		2017

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