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Burak Okumus
Burak Okumus
Scientist
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Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids
A Iqbal, S Arslan, B Okumus, TJ Wilson, G Giraud, DG Norman, T Ha, ...
Proceedings of the National Academy of Sciences 105 (32), 11176-11181, 2008
4052008
Segregation of molecules at cell division reveals native protein localization
D Landgraf, B Okumus, P Chien, TA Baker, J Paulsson
Nature methods 9 (5), 480-482, 2012
3412012
Extreme conformational diversity in human telomeric DNA
JY Lee, B Okumus, DS Kim, T Ha
Proceedings of the National Academy of Sciences 102 (52), 18938-18943, 2005
3162005
Multiple intermediates in SNARE-induced membrane fusion
TY Yoon, B Okumus, F Zhang, YK Shin, T Ha
Proceedings of the National Academy of Sciences 103 (52), 19731-19736, 2006
2562006
Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic
B Okumus, TJ Wilson, DMJ Lilley, T Ha
Biophysical journal 87 (4), 2798-2806, 2004
2332004
Fueling protein–DNA interactions inside porous nanocontainers
I Cisse, B Okumus, C Joo, T Ha
Proceedings of the National Academy of Sciences 104 (31), 12646-12650, 2007
1762007
Single-molecule conformational analysis of G-quadruplex formation in the promoter DNA duplex of the proto-oncogene c-kit
PS Shirude, B Okumus, L Ying, T Ha, S Balasubramanian
Journal of the American Chemical Society 129 (24), 7484-7485, 2007
1562007
Stochastic activation of a DNA damage response causes cell-to-cell mutation rate variation
S Uphoff, ND Lord, B Okumus, L Potvin-Trottier, DJ Sherratt, J Paulsson
Science 351 (6277), 1094-1097, 2016
1542016
Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence
S Bakshi, E Leoncini, C Baker, SJ Cañas-Duarte, B Okumus, J Paulsson
Nature Microbiology 6 (6), 783-791, 2021
752021
G-quadruplex DNA bound by a synthetic ligand is highly dynamic
PV Jena, PS Shirude, B Okumus, K Laxmi-Reddy, F Godde, I Huc, ...
Journal of the American Chemical Society 131 (35), 12522-12523, 2009
652009
Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells
B Okumus, D Landgraf, GC Lai, S Bakshi, JC Arias-Castro, S Yildiz, ...
Nature communications 7 (1), 11641, 2016
642016
Single molecule nanocontainers made porous using a bacterial toxin
B Okumus, S Arslan, SM Fengler, S Myong, T Ha
Journal of the American Chemical Society 131 (41), 14844-14849, 2009
552009
Isolating live cells after high-throughput, long-term, time-lapse microscopy
S Luro, L Potvin-Trottier, B Okumus, J Paulsson
Nature methods 17 (1), 93-100, 2020
482020
Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy
A Lepore, H Taylor, D Landgraf, B Okumus, S Jaramillo-Riveri, L McLaren, ...
Scientific reports 9 (1), 7902, 2019
262019
Single-cell microscopy of suspension cultures using a microfluidics-assisted cell screening platform
B Okumus, CJ Baker, JC Arias-Castro, GC Lai, E Leoncini, S Bakshi, ...
Nature protocols 13 (1), 170-194, 2018
262018
Real-time observation of G-quadruplex dynamics using single-molecule FRET microscopy
B Okumus, T Ha
G-quadruplex DNA: Methods and Protocols, 81-96, 2010
242010
Fluidic and microfluidic tools for quantitative systems biology
B Okumus, S Yildiz, E Toprak
Current opinion in biotechnology 25, 30-38, 2014
232014
Temperature-independent porous nanocontainers for single-molecule fluorescence studies
Y Ishitsuka, B Okumus, S Arslan, KH Chen, T Ha
Analytical chemistry 82 (23), 9694-9701, 2010
222010
Mitigation of host cell mutations and regime shift during microbial fermentation: a perspective from flux memory
JJ Czajka, B Okumuş, MAG Koffas, M Blenner, YJ Tang
Current Opinion In Biotechnology 66, 227-235, 2020
82020
Microfluidic Assisted Cell Screening
B Okumus, D Huh, D Landgraf, J Paulsson, Okumus, Burak
US Patent 20,150,247,790, 2015
32015
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