Thomas Mailund
Thomas Mailund
Associate Professor of Bioinformatics, Aarhus University
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Insights into hominid evolution from the gorilla genome sequence
A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ...
Nature 483 (7388), 169-175, 2012
Great ape genetic diversity and population history
J Prado-Martinez, PH Sudmant, JM Kidd, H Li, JL Kelley, ...
Nature 499 (7459), 471-475, 2013
Comparative and demographic analysis of orang-utan genomes
DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ...
Nature 469 (7331), 529-533, 2011
The bonobo genome compared with the chimpanzee and human genomes
K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ...
Nature 486 (7404), 527-531, 2012
Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model
A Hobolth, OF Christensen, T Mailund, MH Schierup
PLoS genetics 3 (2), e7, 2007
Pigs in sequence space: a 0.66 X coverage pig genome survey based on shotgun sequencing
R Wernersson, M Schierup, F Jørgensen, J Gorodkin, F Panitz, ...
BMC genomics 6 (1), 70, 2005
Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change
W Miller, SC Schuster, AJ Welch, A Ratan, OC Bedoya-Reina, F Zhao, ...
Proceedings of the National Academy of Sciences 109 (36), E2382-E2390, 2012
A genomic history of Aboriginal Australia
AS Malaspinas, MC Westaway, C Muller, VC Sousa, O Lao, I Alves, ...
Nature 538 (7624), 207-214, 2016
Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection
A Hobolth, JY Dutheil, J Hawks, MH Schierup, T Mailund
Genome research 21 (3), 349-356, 2011
Using biological networks to search for interacting loci in genome-wide association studies
M Emily, T Mailund, J Hein, L Schauser, MH Schierup
European Journal of Human Genetics 17 (10), 1231-1240, 2009
A sweep-line method for state space exploration
S Christensen, L Kristensen, T Mailund
Tools and Algorithms for the Construction and Analysis of Systems, 450-464, 2001
Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios
S Besenbacher, S Liu, JMG Izarzugaza, J Grove, K Belling, J Bork-Jensen, ...
Nature communications 6 (1), 1-9, 2015
Ancestral population genomics: the coalescent hidden Markov model approach
JY Dutheil, G Ganapathy, A Hobolth, T Mailund, MK Uyenoyama, ...
Genetics 183 (1), 259, 2009
Rapid neighbour-joining
M Simonsen, T Mailund, C Pedersen
Algorithms in Bioinformatics, 113-122, 2008
A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species
T Mailund, AE Halager, M Westergaard, JY Dutheil, K Munch, ...
PLoS Genet 8 (12), e1003125, 2012
Estimating Divergence Time and Ancestral Effective Population Size of Bornean and Sumatran Orangutan Subspecies Using a Coalescent Hidden Markov Model
T Mailund, JY Dutheil, A Hobolth, G Lunter, MH Schierup
PLoS Genetics 7 (3), e1001319, 2011
Extensive X-linked adaptive evolution in central chimpanzees
C Hvilsom, Y Qian, T Bataillon, Y Li, T Mailund, B Sallé, F Carlsen, R Li, ...
Proceedings of the National Academy of Sciences 109 (6), 2054-2059, 2012
Cultural phylogenetics of the Tupi language family in lowland South America
RS Walker, S Wichmann, T Mailund, CJ Atkisson
PloS one 7 (4), e35025, 2012
CoaSim: a flexible environment for simulating genetic data under coalescent models
T Mailund, M Schierup, C Pedersen, P Mechlenborg, J Madsen, ...
BMC bioinformatics 6 (1), 252, 2005
A generalised sweep-line method for safety properties
L Kristensen, T Mailund
FME 2002: Formal Methods—Getting IT Right, 215-229, 2002
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