| Multi-scale modeling of tissues using CompuCell3D MH Swat, GL Thomas, JM Belmonte, A Shirinifard, D Hmeljak, JA Glazier Methods in cell biology 110, 325-366, 2012 | 491 | 2012 |
| CompuCell, a multi-model framework for simulation of morphogenesis JA Izaguirre, R Chaturvedi, C Huang, T Cickovski, J Coffland, G Thomas, ... Bioinformatics 20 (7), 1129-1137, 2004 | 278 | 2004 |
| Self-propelled particle model for cell-sorting phenomena JM Belmonte, GL Thomas, LG Brunnet, RMC de Almeida, H Chaté Physical Review Letters 100 (24), 248702, 2008 | 154 | 2008 |
| Rounding of aggregates of biological cells: Experiments and simulations JCM Mombach, D Robert, F Graner, G Gillet, GL Thomas, M Idiart, ... Physica A: Statistical Mechanics and its Applications 352 (2-4), 525-534, 2005 | 77 | 2005 |
| Interplay between activator–inhibitor coupling and cell-matrix adhesion in a cellular automaton model for chondrogenic patterning MA Kiskowski, MS Alber, GL Thomas, JA Glazier, NB Bronstein, J Pu, ... Developmental Biology 271 (2), 372-387, 2004 | 75 | 2004 |
| Coarsening of three-dimensional grains in crystals, or bubbles in dry foams, tends towards a universal, statistically scale-invariant regime GL Thomas, RMC De Almeida, F Graner Physical Review E 74 (2), 021407, 2006 | 74 | 2006 |
| Computer simulations of cell sorting due to differential adhesion Y Zhang, GL Thomas, M Swat, A Shirinifard, JA Glazier PloS one 6 (10), e24999, 2011 | 71 | 2011 |
| Non-Turing stripes and spots: a novel mechanism for biological cell clustering W Zeng, GL Thomas, JA Glazier Physica A: Statistical Mechanics and its Applications 341, 482-494, 2004 | 51 | 2004 |
| Emergent stratification in solid tumors selects for reduced cohesion of tumor cells: a multi-cell, virtual-tissue model of tumor evolution using compucell3d MH Swat, GL Thomas, A Shirinifard, SG Clendenon, JA Glazier PloS one 10 (6), e0127972, 2015 | 38 | 2015 |
| Growth laws and self-similar growth regimes of coarsening two-dimensional foams: Transition from dry to wet limits I Fortuna, GL Thomas, RMC de Almeida, F Graner Physical review letters 108 (24), 248301, 2012 | 37 | 2012 |
| Multi-model simulations of chicken limb morphogenesis R Chaturvedi, JA Izaguirre, C Huang, T Cickovski, P Virtue, G Thomas, ... Computational Science—ICCS 2003: International Conference, Melbourne …, 2003 | 36 | 2003 |
| Dibaryons as axially symmetric skyrmions GL Thomas, NN Scoccola, A Wirzba Nuclear Physics A 575 (4), 623-644, 1994 | 33 | 1994 |
| CompuCell3D simulations reproduce mesenchymal cell migration on flat substrates I Fortuna, GC Perrone, MS Krug, E Susin, JM Belmonte, GL Thomas, ... Biophysical Journal 118 (11), 2801-2815, 2020 | 26 | 2020 |
| Dynamics of cell aggregates fusion: Experiments and simulations GL Thomas, V Mironov, A Nagy-Mehez, JCM Mombach Physica A: Statistical Mechanics and its Applications 395, 247-254, 2014 | 23 | 2014 |
| Bursts and cavity formation in Hydra cells aggregates: experiments and simulations JCM Mombach, RMC De Almeida, GL Thomas, A Upadhyaya, JA Glazier Physica A: Statistical Mechanics and its Applications 297 (3-4), 495-508, 2001 | 22 | 2001 |
| 3D simulations of wet foam coarsening evidence a self similar growth regime GL Thomas, JM Belmonte, F Graner, JA Glazier, RMC de Almeida Colloids and Surfaces A: Physicochemical and Engineering Aspects 473, 109-114, 2015 | 20 | 2015 |
| A novel mechanism for mesenchymal condensation during limb chondrogenesis in vitro W Zeng, GL Thomas, SA Newman, JA Glazier Mathematical modelling and computing in biology and medicine, 5th ESMTB …, 2002 | 18 | 2002 |
| Computational methods in cell biology MH Swat, GL Thomas, JM Belmonte, A Shirinifard, D Hmeljak, JA Glazier Methods Cell Biol 110, 325-366, 2012 | 17 | 2012 |
| Parameterizing cell movement when the instantaneous cell migration velocity is ill-defined GL Thomas, I Fortuna, GC Perrone, JA Glazier, JM Belmonte, ... Physica A: Statistical Mechanics and its Applications 550, 124493, 2020 | 15 | 2020 |
| Multi-scale modeling of tissues using CompuCell3D. vol. 110 of Methods in Cell Biology MH Swat, GL Thomas, JM Belmonte, A Shirinifard, D Hmeljak, JA Glazier Burlington: Elsevier, 2012 | 15 | 2012 |
