| The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights … GE Martin, M Rousseau-Gueutin, S Cordonnier, O Lima, ... Annals of botany 113 (7), 1197-1210, 2014 | 98 | 2014 |
| Long-read assembly of the Brassica napus reference genome Darmor-bzh M Rousseau-Gueutin, C Belser, C Da Silva, G Richard, B Istace, ... GigaScience 9 (12), giaa137, 2020 | 70 | 2020 |
| Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae) J Ferreira de Carvalho, J Poulain, C Da Silva, P Wincker, ... Heredity 110 (2), 181-193, 2013 | 65 | 2013 |
| Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole‐genome duplications in Brassica J Ferreira de Carvalho, J Lucas, G Deniot, C Falentin, O Filangi, M Gilet, ... The Plant Journal 98 (3), 434-447, 2019 | 33 | 2019 |
| Small RNAs reflect grandparental environments in apomictic dandelion L Morgado, V Preite, C Oplaat, S Anava, J Ferreira de Carvalho, ... Molecular Biology and Evolution 34 (8), 2035-2040, 2017 | 32 | 2017 |
| Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual … J Ferreira de Carvalho, C Oplaat, N Pappas, M Derks, D de Ridder, ... BMC genomics 17, 1-13, 2016 | 28 | 2016 |
| Recent and dynamic transposable elements contribute to genomic divergence under asexuality J Ferreira de Carvalho, V de Jager, TP van Gurp, NCAM Wagemaker, ... BMC genomics 17, 1-12, 2016 | 27 | 2016 |
| Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima J Boutte, B Aliaga, O Lima, J Ferreira de Carvalho, A Ainouche, J Macas, ... G3: Genes, Genomes, Genetics 6 (1), 29-40, 2016 | 27 | 2016 |
| Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa J Boutte, L Maillet, T Chaussepied, S Letort, JM Aury, C Belser, F Boideau, ... Frontiers in plant science 11, 577536, 2020 | 24 | 2020 |
| Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae) J Boutte, J Ferreira de Carvalho, M Rousseau-Gueutin, J Poulain, ... Genome Biology and Evolution 8 (9), 3030-3044, 2016 | 24 | 2016 |
| Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion KJF Verhoeven, EH Verbon, TP van Gurp, C Oplaat, ... new phytologist 217 (2), 871-882, 2018 | 23 | 2018 |
| Untangling structural factors driving genome stabilization in nascent Brassica napus allopolyploids J Ferreira de Carvalho, S Stoeckel, F Eber, M Lodé‐Taburel, MM Gilet, ... New Phytologist 230 (5), 2072-2084, 2021 | 22 | 2021 |
| Chapter The Intertwined Chloroplast and Nuclear Genome Coevolution in Plants M Rousseau-Gueutin, G Martin, J Ferreira de Carvalho, J Keller, ... InTechOpen, 2018 | 20 | 2018 |
| Gene expression variation in natural populations of hexaploid and allododecaploid Spartina species (Poaceae) J Ferreira de Carvalho, J Boutte, P Bourdaud, H Chelaifa, K Ainouche, ... Plant Systematics and Evolution 303, 1061-1079, 2017 | 20 | 2017 |
| Epigenomic and structural events preclude recombination in Brassica napus F Boideau, G Richard, O Coriton, V Huteau, C Belser, G Deniot, F Eber, ... New Phytologist 234 (2), 545-559, 2022 | 17 | 2022 |
| Persistence, dispersal and genetic evolution of recently formed Spartina homoploid hybrids and allopolyploids in Southern England D Huska, IJ Leitch, JF de Carvalho, AR Leitch, A Salmon, M Ainouche, ... Biological Invasions 18, 2137-2151, 2016 | 17 | 2016 |
| Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis J Ferreira de Carvalho, H Chelaifa, J Boutte, J Poulain, A Couloux, ... Plant molecular biology 83, 591-606, 2013 | 15 | 2013 |
| Transcriptome response of the foundation plant Spartina alterniflora to the Deepwater Horizon oil spill M Alvarez, J Ferreira de Carvalho, A Salmon, ML Ainouche, ... Molecular ecology 27 (14), 2986-3000, 2018 | 12 | 2018 |
| The relative roles of local climate adaptation and phylogeny in determining leaf-out timing of temperate tree species E Desnoues, J Ferreira de Carvalho, CM Zohner, TW Crowther Forest Ecosystems 4, 1-7, 2017 | 11 | 2017 |
| Impact of whole genome triplication on the evolutionary history and the functional dynamics of regulatory genes involved in Brassica self-incompatibility signalling … T Azibi, H Hadj-Arab, M Lodé, J Ferreira de Carvalho, G Trotoux, S Negre, ... Plant reproduction 33, 43-58, 2020 | 10 | 2020 |
