Aedin Culhane

Cited by

	All	Since 2016
Citations	9140	4522
h-index	43	31
i10-index	65	54

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Co-authors

John QuackenbushHarvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-FarberVerified email at hsph.harvard.edu
Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkVerified email at uhnresearch.ca
des higginsUniversity College DublinVerified email at ucd.ie
Professor William M. GallagherUCD Conway Institute, University College DublinVerified email at ucd.ie
Matthew SchwedePhysicianVerified email at ucsf.edu
Levi WaldronCity University of New York School of Public HealthVerified email at sph.cuny.edu
Donal J BrennanUniversity College DublinVerified email at ucd.ie
Michael J DuffySt Vincent's University Hospital and University College DublinVerified email at ucd.ie
Michael BirrerProfessor Medicine HMSVerified email at partners.org
Ronny Drapkin, MD, PhDUniversity of Pennsylvania, Perelman School of MedicineVerified email at pennmedicine.upenn.edu
Markus S. SchröderETH ZürichVerified email at biol.ethz.ch
Chen MengBavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life SciencesVerified email at tum.de
Amin Moghaddas GholamiTechnische Universität München, Chair for Proteomics and BioanalyticsVerified email at tum.de
Daniel GusenleitnerNovartis Institutes for Biomedical ResearchVerified email at novartis.com
Ian B. Jeffery4D Pharma CorkVerified email at 4dpharmaplc.com
Darran O'ConnorRoyal College of Surgeons in IrelandVerified email at rcsi.ie
Giovanni ParmigianiProfessor Department of Data Science, DFCIVerified email at dfci.harvard.edu
Alvis BrazmaSenior Scientist, European Bioinformatics Institute, EMBLVerified email at ebi.ac.uk
Razvan SultanaComputational Biologist, Univ. of Hawai'iVerified email at hawaii.edu
Christos SotiriouUniversité Libre de BruxellesVerified email at bordet.be

Aedin Culhane

Dept of Data Science, Dana-Farber Cancer Institute/ Dept of Biostatistics, Harvard TH Chan School

Verified email at ds.dfci.harvard.edu - Homepage

Bioinformatics tumor immunology Multiomics single cell matrix factorization


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The immune landscape of cancer V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ... Immunity 48 (4), 812-830. e14, 2018	1170	2018
Apoptosis: molecular regulation of cell death AJ Hale, CA Smith, LC Sutherland, VEA Stoneman, VL Longthorne, ... European Journal of Biochemistry 236 (1), 1-26, 1996	908	1996
RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites B Sobhian, G Shao, DR Lilli, AC Culhane, LA Moreau, B Xia, ... Science 316 (5828), 1198-1202, 2007	679	2007
Repeatability of published microarray gene expression analyses JPA Ioannidis, DB Allison, CA Ball, I Coulibaly, X Cui, AC Culhane, ... Nature genetics 41 (2), 149, 2009	560	2009
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data IB Jeffery, DG Higgins, AC Culhane BMC bioinformatics 7 (1), 1-16, 2006	475	2006
MADE4: an R package for multivariate analysis of gene expression data AC Culhane, J Thioulouse, G Perrière, DG Higgins Bioinformatics 21 (11), 2789-2790, 2005	314	2005
A three-gene model to robustly identify breast cancer molecular subtypes B Haibe-Kains, C Desmedt, S Loi, AC Culhane, G Bontempi, ... Journal of the National Cancer Institute 104 (4), 311-325, 2012	293	2012
Between-group analysis of microarray data AC Culhane, G Perriere, EC Considine, TG Cotter, DG Higgins Bioinformatics 18 (12), 1600-1608, 2002	252	2002
survcomp: an R/Bioconductor package for performance assessment and comparison of survival models MS Schröder, AC Culhane, J Quackenbush, B Haibe-Kains Bioinformatics 27 (22), 3206-3208, 2011	249	2011
Dimension reduction techniques for the integrative analysis of multi-omics data C Meng, OA Zeleznik, GG Thallinger, B Kuster, AM Gholami, AC Culhane Briefings in bioinformatics 17 (4), 628-641, 2016	201	2016
Taxonomy of breast cancer based on normal cell phenotype predicts outcome S Santagata, A Thakkar, A Ergonul, B Wang, T Woo, R Hu, JC Harrell, ... The Journal of clinical investigation 124 (2), 859-870, 2014	184	2014
Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ... Nucleic acids research 40 (D1), D1077-D1081, 2012	175	2012
A multivariate approach to the integration of multi-omics datasets C Meng, B Kuster, AC Culhane, AM Gholami BMC bioinformatics 15 (1), 1-13, 2014	170	2014
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis AC Culhane, G Perrière, DG Higgins BMC bioinformatics 4 (1), 1-15, 2003	169	2003
Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples M Riester, W Wei, L Waldron, AC Culhane, L Trippa, E Oliva, S Kim, ... JNCI: Journal of the National Cancer Institute 106 (5), 2014	155	2014
Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue DT Chen, A Nasir, A Culhane, C Venkataramu, W Fulp, R Rubio, T Wang, ... Breast cancer research and treatment 119 (2), 335-346, 2010	154	2010
Analysis of differential gene expression in colorectal cancer and stroma using fluorescence-activated cell sorting purification MJ Smith, AC Culhane, M Donovan, JC Coffey, BD Barry, MA Kelly, ... British journal of cancer 100 (9), 1452-1464, 2009	153	2009
Expression Profiler: next generation—an online platform for analysis of microarray data M Kapushesky, P Kemmeren, AC Culhane, S Durinck, J Ihmels, C Körner, ... Nucleic acids research 32 (suppl_2), W465-W470, 2004	148	2004
Profiles of genomic instability in high-grade serous ovarian cancer predict treatment outcome ZC Wang, NJ Birkbak, AC Culhane, R Drapkin, A Fatima, R Tian, ... Clinical cancer research 18 (20), 5806-5815, 2012	140	2012
Epithelial progeny of estrogen-exposed breast progenitor cells display a cancer-like methylome ASL Cheng, AC Culhane, MWY Chan, CR Venkataramu, M Ehrich, ... Cancer research 68 (6), 1786-1796, 2008	140	2008

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