|A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes|
W Gu, T Zhou, CO Wilke
PLoS computational biology 6 (2), e1000664, 2010
|Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales|
W Gu, T Zhou, J Ma, X Sun, Z Lu
Virus research 101 (2), 155-161, 2004
|Translationally optimal codons associate with structurally sensitive sites in proteins|
T Zhou, M Weems, CO Wilke
Molecular biology and evolution 26 (7), 1571-1580, 2009
|Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses|
T Zhou, W Gu, J Ma, X Sun, Z Lu
Biosystems 81 (1), 77-86, 2005
|Dnmt2 mediates intergenerational transmission of paternally acquired metabolic disorders through sperm small non-coding RNAs.|
Y Zhang, X Zhang, J Shi, F Tuorto, X Li, Y Liu, R Liebers, L Zhang, Y Qu, ...
Nature cell biology 20 (5), 535-540, 2018
|The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens|
W Gu, T Zhou, J Ma, X Sun, Z Lu
Biosystems 73 (2), 89-97, 2004
|Integrating microRNAs into a system biology approach to acute lung injury|
T Zhou, JGN Garcia, W Zhang
Translational Research, 2011
|The relationship between relative solvent accessibility and evolutionary rate in protein evolution|
DC Ramsey, MP Scherrer, T Zhou, CO Wilke
Genetics 188 (2), 479-488, 2011
|Expression profiling of ion channel genes predicts clinical outcome in breast cancer|
JH Ko, EA Ko, W Gu, I Lim, H Bang, T Zhou
Molecular cancer 12 (1), 106, 2013
|Microbes are associated with host innate immune response in idiopathic pulmonary fibrosis|
Y Huang, SF Ma, MS Espindola, R Vij, JM Oldham, GB Huffnagle, ...
American journal of respiratory and critical care medicine 196 (2), 208-219, 2017
|Endothelial HIF-2α contributes to severe pulmonary hypertension due to endothelial-to-mesenchymal transition|
H Tang, A Babicheva, KM McDermott, Y Gu, RJ Ayon, S Song, Z Wang, ...
American Journal of Physiology-Lung Cellular and Molecular Physiology 314 (2 …, 2017
|Unique toll-like receptor 4 activation by NAMPT/PBEF induces NFκB signaling and inflammatory lung injury|
SM Camp, E Ceco, CL Evenoski, SM Danilov, T Zhou, ET Chiang, ...
Scientific reports 5, 13135, 2015
|Targeting sphingosine kinase 1 attenuates bleomycin-induced pulmonary fibrosis|
LS Huang, E Berdyshev, B Mathew, P Fu, IA Gorshkova, D He, W Ma, ...
The FASEB Journal 27 (4), 1749-1760, 2013
|Peripheral Blood Gene Expression as a Novel Genomic Biomarker in Complicated Sarcoidosis|
T Zhou, W Zhang, NJ Sweiss, ES Chen, DR Moller, KS Knox, SF Ma, ...
PLOS ONE 7 (9), e44818, 2012
|The role of RNA structure at 5′ untranslated region in microRNA-mediated gene regulation|
W Gu, Y Xu, X Xie, T Wang, JH Ko, T Zhou
RNA 20 (9), 1369-1375, 2014
|Sphingosine-1-Phosphate Receptor 3 is a Novel Biomarker in Acute Lung Injury.|
X Sun, PA Singleton, E Letsiou, J Zhao, P Belvitch, S Sammani, ...
American journal of respiratory cell and molecular biology, 2012
|Detecting positive and purifying selection at synonymous sites in yeast and worm|
T Zhou, W Gu, CO Wilke
Molecular biology and evolution 27 (8), 1912-1922, 2010
|Cluster analysis of the codon use frequency of MHC genes from different species|
J Ma, T Zhou, W Gu, X Sun, Z Lu
Biosystems 65 (2-3), 199-207, 2002
|Type 2 Deiodinase and Host Responses of Sepsis and Acute Lung Injury.|
SF Ma, L Xie, M Pino-Yanes, S Sammani, MS Wade, E Letsiou, J Siegler, ...
American journal of respiratory cell and molecular biology, 2011
|Contact density affects protein evolutionary rate from bacteria to animals|
T Zhou, DA Drummond, CO Wilke
Journal of Molecular Evolution 66 (4), 395-404, 2008