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Christian Höner zu Siederdissen
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ViennaRNA Package 2.0
R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ...
Algorithms for Molecular Biology 6 (1), 26, 2011
50212011
Animal snoRNAs and scaRNAs with exceptional structures
M Marz, AR Gruber, C Höner zu Siederdissen, F Amman, S Badelt, ...
RNA biology 8 (6), 938, 2011
144*2011
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
M Hackl, T Jakobi, J Blom, D Doppmeier, K Brinkrolf, R Szczepanowski, ...
Journal of biotechnology, 2011
1322011
ViennaRNA Package 2.0
PF Stadler, IL Hofacker, R Lorenz, SH Bernhart, H Tafer, C Siederdissen
Algorithms, 2011
1012011
Predicting RNA 3D structure using a coarse-grain helix-centered model
P Kerpedjiev, C Höner zu Siederdissen, IL Hofacker
RNA 21 (6), 1110-1121, 2015
872015
A folding algorithm for extended RNA secondary structures
C Höner zu Siederdissen, SH Bernhart, PF Stadler, IL Hofacker
Bioinformatics 27 (13), i129-i136, 2011
752011
2D meets 4G: G-quadruplexes in RNA secondary structure prediction
R Lorenz, S Bernhart, J Qin, C Höner zu Siederdissen, A Tanzer, ...
Transactions on Computational Biology and Bioinformatics, 1-1, 2013
542013
Systematic analysis and evolution of 5S ribosomal DNA in metazoans.
J Vierna, S Wehner, C Höner zu Siederdissen, A Martınez-Lage, M Marz
Heredity 1, 12, 2013
522013
Computational Design of RNAs with Complex Energy Landscapes
C Höner zu Siederdissen, S Hammer, I Abfalter, IL Hofacker, C Flamm, ...
Biopolymers 99 (12), 1124-1136, 2013
462013
microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3′ untranslated region: function in replication and influence of RNA secondary structure
GK Gerresheim, N Dünnes, A Nieder-Röhrmann, LA Shalamova, M Fricke, ...
Cellular and molecular life sciences 74 (4), 747-760, 2017
392017
Accurate annotation of protein-coding genes in mitochondrial genomes
M Al Arab, C Höner zu Siederdissen, K Tout, AH Sahyoun, PF Stadler, ...
Molecular phylogenetics and evolution 106, 209-216, 2017
372017
Deep sequencing of small RNAs confirms an annelid affinity of Myzostomida
C Helm, SH Bernhart, C Höner zu Siederdissen, B Nickel, C Bleidorn
Molecular Phylogenetics and Evolution, 2012
372012
Sneaking Around concatMap: Efficient Combinators for Dynamic Programming
C Höner zu Siederdissen
17th ACM SIGPLAN international conference on Functional programming, 215-226, 2012
322012
RNAlien - Unsupervised RNA family model construction
F Eggenhofer, IL Hofacker, C Höner zu Siederdissen
302016
The HERMIT in the stream: fusing stream fusion's concatMap
A Farmer, C Höner zu Siederdissen, A Gill
Proceedings of the ACM SIGPLAN 2014 workshop on Partial evaluation and …, 2014
282014
Discriminatory power of RNA family models
C Höner zu Siederdissen, IL Hofacker
Bioinformatics 26 (18), i453-i459, 2010
282010
Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes
AH Sahyoun, M Hölzer, F Jühling, C Höner zu Siederdissen, M Al-Arab, ...
Nucleic Acids Research 43 (16), 8044-8056, 2015
272015
ViennaRNA Package 2.0. vol. 6
R Lorenz, SH Bernhart, CH Zu Siederdissen, H Tafer, C Flamm, ...
Algorithms Mol. Biol 26, 2011
262011
Algebraic dynamic programming over general data structures
C Höner zu Siederdissen, SJ Prohaska, PF Stadler
BMC bioinformatics 16 (19), S2, 2015
24*2015
flowEMMi: An automated model-based clustering tool for microbial cytometric data
J Ludwig, C Höner zu Siederdissen, Z Liu, PF Stadler, S Müller
BMC bioinformatics 20 (1), 643, 2019
222019
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