| starBase v2. 0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data JH Li, S Liu, H Zhou, LH Qu, JH Yang Nucleic acids research 42 (D1), D92-D97, 2014 | 4434 | 2014 |
| starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data JH Yang, JH Li, P Shao, H Zhou, YQ Chen, LH Qu Nucleic acids research 39 (suppl 1), D202-D209, 2011 | 820 | 2011 |
| Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex C Luo, CL Keown, L Kurihara, J Zhou, Y He, J Li, R Castanon, J Lucero, ... Science 357 (6351), 600-604, 2017 | 462 | 2017 |
| ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data JH Yang, JH Li, S Jiang, H Zhou, LH Qu Nucleic acids research 41 (D1), D177-D187, 2013 | 351 | 2013 |
| deepBase v2. 0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data LL Zheng, JH Li, J Wu, WJ Sun, S Liu, ZL Wang, H Zhou, JH Yang, LH Qu Nucleic acids research 44 (D1), D196-D202, 2016 | 212 | 2016 |
| RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data WJ Sun, JH Li, S Liu, J Wu, H Zhou, LH Qu, JH Yang Nucleic acids research 44 (D1), D259-D265, 2016 | 181 | 2016 |
| β-Catenin/LEF1 transactivates the microRNA-371-373 cluster that modulates the Wnt/β-catenin-signaling pathway AD Zhou, LT Diao, H Xu, ZD Xiao, JH Li, H Zhou, LH Qu Oncogene 31 (24), 2968-2978, 2012 | 173 | 2012 |
| Single-cell sequencing of brain cell transcriptomes and epigenomes EJ Armand, J Li, F Xie, C Luo, EA Mukamel Neuron 109 (1), 11-26, 2021 | 169 | 2021 |
| Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus TY Zhang, CL Keown, X Wen, J Li, DA Vousden, C Anacker, ... Nature communications 9 (1), 298, 2018 | 146 | 2018 |
| tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers LL Zheng, WL Xu, S Liu, WJ Sun, JH Li, J Wu, JH Yang, LH Qu Nucleic acids research 44 (W1), W185-W193, 2016 | 121 | 2016 |
| A unique role for DNA (hydroxy) methylation in epigenetic regulation of human inhibitory neurons A Kozlenkov, J Li, P Apontes, YL Hurd, WM Byne, EV Koonin, M Wegner, ... Science Advances 4 (9), eaau6190, 2018 | 97 | 2018 |
| Inhibition of the JNK/MAPK signaling pathway by myogenesis-associated miRNAs is required for skeletal muscle development SJ Xie, JH Li, HF Chen, YY Tan, SR Liu, Y Zhang, H Xu, JH Yang, S Liu, ... Cell Death & Differentiation, 1, 2018 | 94 | 2018 |
| Discovery of protein–lncRNA interactions by integrating large-scale CLIP-seq and RNA-seq datasets JH Li, S Liu, LL Zheng, J Wu, WJ Sun, ZL Wang, H Zhou, LH Qu, JH Yang Frontiers in bioengineering and biotechnology 2, 88, 2015 | 79 | 2015 |
| A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target K Fang, BW Han, ZH Chen, KY Lin, CW Zeng, XJ Li, JH Li, XQ Luo, ... Human molecular genetics 23 (12), 3278-3288, 2014 | 59 | 2014 |
| MtiBase: a database for decoding microRNA target sites located within CDS and 5′ UTR regions from CLIP-Seq and expression profile datasets ZW Guo, C Xie, JR Yang, JH Li, JH Yang, L Zheng Database 2015, bav102, 2015 | 35 | 2015 |
| StarScan: a web server for scanning small RNA targets from degradome sequencing data S Liu, JH Li, J Wu, KR Zhou, H Zhou, JH Yang, LH Qu Nucleic acids research 43 (W1), W480-W486, 2015 | 30 | 2015 |
| Cellular and genetic drivers of RNA editing variation in the human brain WH Cuddleston, J Li, X Fan, A Kozenkov, M Lalli, S Khalique, S Dracheva, ... Nature Communications 13 (1), 2997, 2022 | 22 | 2022 |
| Integrative analysis reveals clinical phenotypes and oncogenic potentials of long non-coding RNAs across 15 cancer types ZL Wang, B Li, SR Piccolo, XQ Zhang, JH Li, H Zhou, JH Yang, LH Qu Oncotarget 7 (23), 35044, 2016 | 21 | 2016 |
| Evolution of regulatory signatures in primate cortical neurons at cell-type resolution A Kozlenkov, MW Vermunt, P Apontes, J Li, K Hao, CC Sherwood, PR Hof, ... Proceedings of the National Academy of Sciences 117 (45), 28422-28432, 2020 | 17 | 2020 |
| Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3 J Li, A Pinto-Duarte, M Zander, MS Cuoco, CY Lai, J Osteen, L Fang, ... eLife 11, e66909, 2022 | 12 | 2022 |
Jianhua YangProfessor of Life Sciences, Sun Yat-sen UniversityVerified email at mail.sysu.edu.cn
