Sabrina de Azevedo Silveira
Sabrina de Azevedo Silveira
Professor at Department of Computer Science, Universidade Federal de Viçosa
Geverifieerd e-mailadres voor ufv.br
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nAPOLI: a graph-based strategy to detect and visualize conserved protein-ligand interactions in large-scale
AV Fassio, LH Santos, SA Silveira, RS Ferreira, RC de Melo-Minardi
IEEE/ACM transactions on computational biology and bioinformatics 17 (4 …, 2019
112019
Enzymap: Exploiting protein annotation for modeling and predicting ec number changes in uniprot/swiss-prot
S de Azevedo Silveira, RC de Melo-Minardi, CH da Silveira, MM Santoro, ...
PloS one 9 (2), e89162, 2014
82014
ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/Swiss-Prot
SA Silveira, AO Rodrigues, RC de Melo-Minardi, CH da Silveira, W Meira
2012 IEEE Symposium on Biological Data Visualization (BioVis), 49-56, 2012
72012
Vermont: Visualizing mutations and their effects on protein physicochemical and topological property conservation
SA Silveira, AV Fassio, VM Gonçalves-Almeida, EB de Lima, YT Barcelos, ...
BMC proceedings 8 (2), 1-10, 2014
62014
Vermont: a multi-perspective visual interactive platform for mutational analysis
AV Fassio, PM Martins, SS Guimarães, SSA Junior, VS Ribeiro, ...
BMC bioinformatics 18 (10), 51-63, 2017
52017
Gremlin: A graph mining strategy to infer protein-ligand interaction patterns
CA Santana, FR Cerqueira, CH Da Silveira, AV Fassio, ...
2016 IEEE 16th International Conference on Bioinformatics and Bioengineering …, 2016
42016
Structural analysis
T Wu, Z Guo, J Hou, J Cheng, J Aguirre-Plans, A Meseguer, ...
BMC Bioinformatics 22, 30, 2021
32021
ppiGReMLIN: a graph mining based detection of conserved structural arrangements in protein-protein interfaces
FC Queiroz, AMP Vargas, MGA Oliveira, GV Comarela, SA Silveira
BMC bioinformatics 21, 1-25, 2020
22020
visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level
VS Ribeiro, CA Santana, AV Fassio, FR Cerqueira, CH da Silveira, ...
BMC bioinformatics 21 (2), 1-12, 2020
22020
Revealing protein-ligand interaction patterns through frequent subgraph mining
SA Silveira, AV Fassio, CH da Silveira, RC de Melo-Minardi
Proceedings of the International Conference on Bioinformatics …, 2015
22015
An interactive strategy to visualize common subgraphs in protein-ligand interaction
AV Fassio, CA Santana, FR Cerqueira, CH da Silveira, JPR Romanelli, ...
International Conference on Bioinformatics and Biomedical Engineering, 383-394, 2018
12018
How to compute protein residue contacts more accurately?
PM Martins, VD Mayrink, S de A. Silveira, CH da Silveira, LHF de Lima, ...
Proceedings of the 33rd Annual ACM Symposium on Applied Computing, 60-67, 2018
12018
Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm
PM Martins, LH Santos, D Mariano, FC Queiroz, LL Bastos, IS Gomes, ...
BMC bioinformatics 22 (1), 1-20, 2021
2021
GRaSP: a graph-based residue neighborhood strategy to predict binding sites
CA Santana, SA Silveira, JPA Moraes, SC Izidoro, RC de Melo-Minardi, ...
Bioinformatics 36 (Supplement_2), i726-i734, 2020
2020
Protein Abundance Prediction Through Machine Learning Methods
M Ferreira, R Ventorim, E Almeida, S Silveira, W Silveira
bioRxiv, 2020
2020
A Hierarchical and Scalable Strategy for Protein Structural Classification
VF Mendes, CR Monteiro, GV Comarela, SA Silveira
International Work-Conference on Bioinformatics and Biomedical Engineering …, 2019
2019
Protein Structural Signatures Revisited: Geometric Linearity of Main Chains are More Relevant to Classification Performance than Packing of Residues
JAFG Campelo, CR Monteiro, CH da Silveira, S de Azevedo Silveira, ...
International Work-Conference on Bioinformatics and Biomedical Engineering …, 2019
2019
GAPIN: Grouped and Aligned Protein Interface Networks
BM Araújo, AL Coelho, SA Silveira, JPR Romanelli, RC de Melo-Minardi, ...
bioRxiv, 520833, 2019
2019
Using supervised learning successful descriptors to perform protein structural classification through unsupervised learning
C Monteiro, VÍ Mendes, G Comarela, SA Silveira
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018
2018
CALI: A novel visual model for frequent pattern mining in protein-ligand graphs
SG Medina, AV Fassio, SA Silveira, CH da Silveira, RC de Melo-Minardi
2017 IEEE 17th International Conference on Bioinformatics and Bioengineering …, 2017
2017
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Artikelen 1–20