| The ClusPro web server for protein–protein docking D Kozakov, DR Hall, B Xia, KA Porter, D Padhorny, C Yueh, D Beglov, ... Nature protocols 12 (2), 255-278, 2017 | 2714 | 2017 |
| PIPER: an FFT‐based protein docking program with pairwise potentials D Kozakov, R Brenke, SR Comeau, S Vajda Proteins: Structure, Function, and Bioinformatics 65 (2), 392-406, 2006 | 1039 | 2006 |
| How good is automated protein docking? D Kozakov, D Beglov, T Bohnuud, SE Mottarella, B Xia, DR Hall, S Vajda Proteins: Structure, Function, and Bioinformatics 81 (12), 2159-2166, 2013 | 817 | 2013 |
| The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins D Kozakov, LE Grove, DR Hall, T Bohnuud, SE Mottarella, L Luo, B Xia, ... Nature protocols 10 (5), 733-755, 2015 | 633 | 2015 |
| New additions to the C lus P ro server motivated by CAPRI S Vajda, C Yueh, D Beglov, T Bohnuud, SE Mottarella, B Xia, DR Hall, ... Proteins: Structure, Function, and Bioinformatics 85 (3), 435-444, 2017 | 549 | 2017 |
| Fragment-based identification of druggable ‘hot spots’ of proteins using Fourier domain correlation techniques R Brenke, D Kozakov, GY Chuang, D Beglov, D Hall, MR Landon, ... Bioinformatics 25 (5), 621-627, 2009 | 532 | 2009 |
| Performance and its limits in rigid body protein-protein docking IT Desta, KA Porter, B Xia, D Kozakov, S Vajda Structure 28 (9), 1071-1081. e3, 2020 | 524 | 2020 |
| How proteins bind macrocycles EA Villar, D Beglov, S Chennamadhavuni, JA Porco Jr, D Kozakov, ... Nature chemical biology 10 (9), 723-731, 2014 | 420 | 2014 |
| Allostery in its many disguises: from theory to applications SJ Wodak, E Paci, NV Dokholyan, IN Berezovsky, A Horovitz, J Li, ... Structure 27 (4), 566-578, 2019 | 331 | 2019 |
| Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13–19 D Kozakov, DR Hall, D Beglov, R Brenke, SR Comeau, Y Shen, K Li, ... Proteins: Structure, Function, and Bioinformatics 78 (15), 3124-3130, 2010 | 298 | 2010 |
| FTSite: high accuracy detection of ligand binding sites on unbound protein structures CH Ngan, DR Hall, B Zerbe, LE Grove, D Kozakov, S Vajda Bioinformatics 28 (2), 286-287, 2012 | 280 | 2012 |
| Structural conservation of druggable hot spots in protein–protein interfaces D Kozakov, DR Hall, GY Chuang, R Cencic, R Brenke, LE Grove, ... Proceedings of the National Academy of Sciences 108 (33), 13528-13533, 2011 | 279 | 2011 |
| Convergence and combination of methods in protein–protein docking S Vajda, D Kozakov Current opinion in structural biology 19 (2), 164-170, 2009 | 272 | 2009 |
| Accelerating and focusing protein–protein docking correlations using multi-dimensional rotational FFT generating functions DW Ritchie, D Kozakov, S Vajda Bioinformatics 24 (17), 1865-1873, 2008 | 258 | 2008 |
| Reversing chemoresistance by small molecule inhibition of the translation initiation complex eIF4F R Cencic, DR Hall, F Robert, Y Du, J Min, L Li, M Qui, I Lewis, S Kurtkaya, ... Proceedings of the National Academy of Sciences 108 (3), 1046-1051, 2011 | 214 | 2011 |
| Application of asymmetric statistical potentials to antibody–protein docking R Brenke, DR Hall, GY Chuang, SR Comeau, T Bohnuud, D Beglov, ... Bioinformatics 28 (20), 2608-2614, 2012 | 213 | 2012 |
| Ligand Binding and Activation of PPARγ by Firemaster® 550: Effects on Adipogenesis and Osteogenesis in Vitro HK Pillai, M Fang, D Beglov, D Kozakov, S Vajda, HM Stapleton, ... Environmental health perspectives 122 (11), 1225-1232, 2014 | 212 | 2014 |
| DARS (Decoys As the Reference State) potentials for protein-protein docking GY Chuang, D Kozakov, R Brenke, SR Comeau, S Vajda Biophysical journal 95 (9), 4217-4227, 2008 | 202 | 2008 |
| Analysis of binding site hot spots on the surface of Ras GTPase G Buhrman, O Casey, B Zerbe, BM Kearney, R Napoleon, EA Kovrigina, ... Journal of molecular biology 413 (4), 773-789, 2011 | 185 | 2011 |
| A critical overview of computational approaches employed for COVID-19 drug discovery EN Muratov, R Amaro, CH Andrade, N Brown, S Ekins, D Fourches, ... Chemical Society Reviews 50 (16), 9121-9151, 2021 | 180 | 2021 |
