Pedro Madrigal
Pedro Madrigal
University of Cambridge, United Kingdom
Verified email at cam.ac.uk - Homepage
Title
Cited by
Cited by
Year
A Survey of Best Practices for RNA-seq Data Analysis
A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero, A Cervera, ...
Genome Biology 17, 13, 2016
14052016
Practical guidelines for the comprehensive analysis of ChIP-seq data
T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ...
PLoS Computational Biology 9 (11), e1003326, 2013
2692013
Cholangiocytes derived from human induced pluripotent stem cells for disease modeling and drug validation
F Sampaziotis, M Cardoso de Brito, P Madrigal, A Bertero, K Saeb-Parsy, ...
Nature Biotechnology, 2015
1902015
Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development
A Pajoro, P Madrigal, JM Muiņo, JT Matus, J Jin, MA Mecchia, ...
Genome biology 15 (3), R41, 2014
1512014
Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids
F Sampaziotis, AW Justin, OC Tysoe, S Sawiak, EM Godfrey, SS Upponi, ...
Nature medicine 23 (8), 954, 2017
1002017
Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids
F Sampaziotis, AW Justin, OC Tysoe, S Sawiak, EM Godfrey, SS Upponi, ...
Nature medicine 23 (8), 954, 2017
1002017
The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency
A Bertero, S Brown, P Madrigal, A Osnato, D Ortmann, L Yiangou, ...
Nature 555 (7695), 256-259, 2018
992018
Activin/nodal signaling and NANOG orchestrate human embryonic stem cell fate decisions by controlling the H3K4me3 chromatin mark
A Bertero, P Madrigal, A Galli, NC Hubner, I Moreno, D Burks, S Brown, ...
Genes & development 29 (7), 702-717, 2015
912015
Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis
JL Mateos, P Madrigal, K Tsuda, V Rawat, R Richter, M Romera-Branchat, ...
Genome Biology 16, 31, 2015
912015
Initiation of stem cell differentiation involves cell cycle-dependent regulation of developmental genes by Cyclin D
S Pauklin, P Madrigal, A Bertero, L Vallier
Genes & development 30, 421-433, 2016
822016
Current bioinformatic approaches to identify DNase I hypersensitive sites and genomic footprints from DNase-seq data
P Madrigal, P Krajewski
Frontiers in Genetics 3, 230, 2012
412012
On Accounting for Sequence-Specific Bias in Genome-Wide Chromatin Accessibility Experiments: Recent Advances and Contradictions
P Madrigal
Front. Bioeng. Biotechnol. 3, 144, 2015
292015
Divergence of regulatory networks governed by the orthologous transcription factors FLC and PEP1 in Brassicaceae species
JL Mateos, V Tilmes, P Madrigal, E Severing, R Richter, CWM Rijkenberg, ...
Proceedings of the National Academy of Sciences, 10.1073/pnas.1618075114, 2017
212017
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
ASE Cuomo, DD Seaton, DJ McCarthy, I Martinez, MJ Bonder, ...
Nature Communications 11, 1-14, 2020
202020
AP-1 Takes Centre Stage in Enhancer Chromatin Dynamics
P Madrigal, K Alasoo
Trends in Cell Biology 28 (7), 3, 2018
192018
hiPSC hepatocyte model demonstrates the role of unfolded protein response and inflammatory networks in α1-antitrypsin deficiency
CP Segeritz, ST Rashid, M Cardoso de Brito, MS Paola, A Ordonez, ...
Journal of Hepatology, 2018
142018
Uncovering correlated variability in epigenomic datasets using the Karhunen-Loeve transform
P Madrigal, P Krajewski
BioData Mining 8, 20, 2015
132015
GATA6 Cooperates with EOMES/SMAD2/3 to Deploy the Gene Regulatory Network Governing Human Definitive Endoderm and Pancreas Formation
CY Chia, P Madrigal, SLIJ Denil, I Martinez, J Garcia-Bernardo, ...
Stem Cell Reports 12 (1), 57-70, 2019
112019
CexoR: an R/Bioconductor package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
P Madrigal
EMBnet.journal 21, e837, 2015
72015
Functional data analysis for computational biology
M Cremona, H Xu, K Makova, M Reimherr, F Chiaromonte, P Madrigal
Bioinformatics, 2019
62019
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Articles 1–20