Pedro Madrigal
Title
Cited by
Cited by
Year
A Survey of Best Practices for RNA-seq Data Analysis
A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero, A Cervera, ...
Genome Biology 17, 13, 2016
16232016
Practical guidelines for the comprehensive analysis of ChIP-seq data
T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ...
PLoS Computational Biology 9 (11), e1003326, 2013
2832013
Cholangiocytes derived from human induced pluripotent stem cells for disease modeling and drug validation
F Sampaziotis, M Cardoso de Brito, P Madrigal, A Bertero, K Saeb-Parsy, ...
Nature Biotechnology, 2015
2262015
Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development
A Pajoro, P Madrigal, JM Muiño, JT Matus, J Jin, MA Mecchia, ...
Genome biology 15 (3), R41, 2014
1622014
The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency
A Bertero, S Brown, P Madrigal, A Osnato, D Ortmann, L Yiangou, ...
Nature 555 (7695), 256-259, 2018
1272018
Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids
F Sampaziotis, AW Justin, OC Tysoe, S Sawiak, EM Godfrey, SS Upponi, ...
Nature medicine 23 (8), 954, 2017
1242017
Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids
F Sampaziotis, AW Justin, OC Tysoe, S Sawiak, EM Godfrey, SS Upponi, ...
Nature medicine 23 (8), 954, 2017
1242017
Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis
JL Mateos, P Madrigal, K Tsuda, V Rawat, R Richter, M Romera-Branchat, ...
Genome Biology 16, 31, 2015
1042015
Activin/nodal signaling and NANOG orchestrate human embryonic stem cell fate decisions by controlling the H3K4me3 chromatin mark
A Bertero, P Madrigal, A Galli, NC Hubner, I Moreno, D Burks, S Brown, ...
Genes & development 29 (7), 702-717, 2015
952015
Initiation of stem cell differentiation involves cell cycle-dependent regulation of developmental genes by Cyclin D
S Pauklin, P Madrigal, A Bertero, L Vallier
Genes & development 30, 421-433, 2016
902016
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
ASE Cuomo, DD Seaton, DJ McCarthy, I Martinez, MJ Bonder, ...
Nature Communications 11, 1-14, 2020
502020
Current bioinformatic approaches to identify DNase I hypersensitive sites and genomic footprints from DNase-seq data
P Madrigal, P Krajewski
Frontiers in Genetics 3, 230, 2012
442012
On Accounting for Sequence-Specific Bias in Genome-Wide Chromatin Accessibility Experiments: Recent Advances and Contradictions
P Madrigal
Front. Bioeng. Biotechnol. 3, 144, 2015
312015
Divergence of regulatory networks governed by the orthologous transcription factors FLC and PEP1 in Brassicaceae species
JL Mateos, V Tilmes, P Madrigal, E Severing, R Richter, CWM Rijkenberg, ...
Proceedings of the National Academy of Sciences, 10.1073/pnas.1618075114, 2017
262017
AP-1 Takes Centre Stage in Enhancer Chromatin Dynamics
P Madrigal, K Alasoo
Trends in Cell Biology 28 (7), 3, 2018
252018
hiPSC hepatocyte model demonstrates the role of unfolded protein response and inflammatory networks in α1-antitrypsin deficiency
CP Segeritz, ST Rashid, M Cardoso de Brito, MS Paola, A Ordonez, ...
Journal of Hepatology, 2018
172018
GATA6 Cooperates with EOMES/SMAD2/3 to Deploy the Gene Regulatory Network Governing Human Definitive Endoderm and Pancreas Formation
CY Chia, P Madrigal, SLIJ Denil, I Martinez, J Garcia-Bernardo, ...
Stem Cell Reports 12 (1), 57-70, 2019
152019
Functional Divergence of the Arabidopsis Florigen-Interacting bZIP Transcription Factors FD and FDP
M Romera-Branchat, E Severing, C Pocard, H Ohr, C Vincent, G Née, ...
Cell Reports 31 (9), 107717, 2020
132020
Uncovering correlated variability in epigenomic datasets using the Karhunen-Loeve transform
P Madrigal, P Krajewski
BioData Mining 8, 20, 2015
122015
Functional data analysis for computational biology
M Cremona, H Xu, K Makova, M Reimherr, F Chiaromonte, P Madrigal
Bioinformatics, 2019
82019
The system can't perform the operation now. Try again later.
Articles 1–20