Shadi Shafighi

20212022202320241 4 3 16

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Ewa SzczurekAssociate Professor at University of Warsaw / Institute AI for Health, Helmholtz Zentrum MünchenVerified email at mimuw.edu.pl
Alicja RączkowskaPhD, Allegro Machine Learning Research, IDEAS NCBRVerified email at allegro.com
Jens LagergrenKTH, Royal Institute of TechnologyVerified email at scilifelab.se
Szymon M. KiełbasaBiomedical Data SciencesVerified email at lumc.nl
Kees van BergenLeiden University Medical CenterVerified email at ziggo.nl
Leszek KaczmarekNencki Institute, Warsaw, PolandVerified email at nencki.edu.pl
Davy CatsLeiden University Medical CenterVerified email at lumc.nl
Susan KloetLeiden University Medical CenterVerified email at lumc.nl
Hailiang MeiLeiden University Medical CenterVerified email at lumc.nl

Shadi Shafighi

Cambridge University, Cancer Research UK Cambridge Institute

Verified email at cruk.cam.ac.uk


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Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data A Geras, S Darvish Shafighi, K Domżał, I Filipiuk, A Rączkowska, ... Genome Biology 24 (1), 120, 2023	14	2023
CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells SD Shafighi, SM Kiełbasa, J Sepúlveda-Yáñez, R Monajemi, D Cats, ... Genome medicine 13, 1-16, 2021	9	2021
Tumoroscope: a probabilistic model for mapping cancer clones in tumor tissues SD Shafighi, A Geras, B Jurzysta, AS Naeini, I Filipiuk, Ł Rączkowski, ... bioRxiv, 2022.09. 22.508914, 2022	1	2022
CaClust: linking genotype to transcriptional heterogeneity of follicular lymphoma using BCR and exomic variants K Oksza-Orzechowski, E Quinten, S Shafighi, SM Kiełbasa, ... Genome Biology 25, 286, 2024		2024
Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope S Shafighi, A Geras, B Jurzysta, A Sahaf Naeini, I Filipiuk, ... Nature Communications 15 (1), 9343, 2024		2024
Sepul eda-anez SD Shafighi, SM Kielbasa Mona emi, R., Cats, D., Mei, HL,… Szczurek, E, 2021		2021

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