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Remie Janssen
Remie Janssen
former PhD student, TU Delft
Verified email at tudelft.nl
Title
Cited by
Cited by
Year
On cherry-picking and network containment
R Janssen, Y Murakami
Theoretical Computer Science, 2020
27*2020
Exploring the tiers of rooted phylogenetic network space using tail moves
R Janssen, M Jones, PL Erdős, L van Iersel, C Scornavacca
Bulletin of mathematical biology 80 (8), 2177-2208, 2018
232018
Orienting undirected phylogenetic networks
KT Huber, L van Iersel, R Janssen, M Jones, V Moulton, Y Murakami, ...
arXiv preprint arXiv:1906.07430, 2019
18*2019
Polynomial-Time Algorithms for Phylogenetic Inference Problems involving duplication and reticulation.
L van Iersel, R Janssen, M Jones, Y Murakami, N Zeh
IEEE/ACM transactions on computational biology and bioinformatics, 2019
15*2019
Reconstructing Tree-child Networks from Reticulate-edge-deleted Subnetworks
Y Murakami, L van Iersel, R Janssen, M Jones, V Moulton
arXiv preprint arXiv:1811.06777, 2018
152018
A unifying characterization of tree-based networks and orchard networks using cherry covers
L van Iersel, R Janssen, M Jones, Y Murakami, N Zeh
Advances in Applied Mathematics 129, 102222, 2021
132021
A practical fixed-parameter algorithm for constructing tree-child networks from multiple binary trees
L van Iersel, R Janssen, M Jones, Y Murakami, N Zeh
Algorithmica 84 (4), 917-960, 2022
112022
Comparing the topology of phylogenetic network generators
R Janssen, P Liu
Journal of Bioinformatics and Computational Biology 19 (6), 2140012, 2021
102021
Orchard Networks are Trees with Additional Horizontal Arcs
L van Iersel, R Janssen, M Jones, Y Murakami
Bulletin of Mathematical Biology 84 (8), 1-21, 2022
72022
Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes
E Gross, L van Iersel, R Janssen, M Jones, C Long, Y Murakami
Journal of Mathematical Biology 83 (3), 1-24, 2021
72021
Linear Time Algorithm for Tree-Child Network Containment
R Janssen, Y Murakami
International Conference on Algorithms for Computational Biology, 93-107, 2020
72020
Treewidth of display graphs: bounds, brambles and applications
R Janssen, M Jones, S Kelk, G Stamoulis, T Wu
Journal of Graph Algorithms and Applications 23 (4), 715-743, 2019
72019
Heading in the right direction? Using head moves to traverse phylogenetic network space
R Janssen
Journal of Graph Algorithms and Applications 25 (1), 263-310, 2021
62021
Rearrangement operations on unrooted phylogenetic networks
R Janssen, J Klawitter
Theory and Applications of Graphs 6 (2), 6, 2019
52019
The Burning Number of Directed Graphs: Bounds and Computational Complexity
R Janssen
Theory and Applications of Graphs 7 (1), 8, 2020
42020
Combining Networks Using Cherry Picking Sequences
R Janssen, M Jones, Y Murakami
International Conference on Algorithms for Computational Biology, 77-92, 2020
42020
Cutting an alignment with Ockham's razor
M Jones, P Gambette, L van Iersel, R Janssen, S Kelk, F Pardi, ...
arXiv preprint arXiv:1910.11041, 2019
32019
Rearranging Phylogenetic Networks
R Janssen
Delft University of Technology, 2021
12021
A Near-Linear Kernel for Two-Parsimony Distance
E Deen, L van Iersel, R Janssen, M Jones, Y Murakami, N Zeh
arXiv preprint arXiv:2211.00378, 2022
2022
Connectedness of Unit Distance Subgraphs Induced by Closed Convex Sets
R Janssen, L van Steijn
Theory and Applications of Graphs 9 (1), 2022
2022
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Articles 1–20