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Manuel Gil
Manuel Gil
Head of Biomedical String Analysis, ZHAW
Verified email at zhaw.ch
Title
Cited by
Cited by
Year
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel
Systematic biology 60 (5), 685-699, 2011
9852011
β-AMYLASE4, a Noncatalytic Protein Required for Starch Breakdown, Acts Upstream of Three Active β-Amylases in Arabidopsis Chloroplasts
DC Fulton, M Stettler, T Mettler, CK Vaughan, J Li, P Francisco, M Gil, ...
The Plant Cell 20 (4), 1040-1058, 2008
3592008
Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ...
Systematic biology 64 (5), 778-791, 2015
2352015
Inferring hierarchical orthologous groups from orthologous gene pairs
AM Altenhoff, M Gil, GH Gonnet, C Dessimoz
PloS one 8 (1), e53786, 2013
1702013
Phylogenetic assessment of alignments reveals neglected tree signal in gaps
C Dessimoz, M Gil
Genome biology 11, 1-9, 2010
1422010
CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models
M Gil, MS Zanetti, S Zoller, M Anisimova
Molecular biology and evolution 30 (6), 1270-1280, 2013
1132013
OMA, a comprehensive, automated project for the identification of orthologs from complete genome data: introduction and first achievements
C Dessimoz, G Cannarozzi, M Gil, D Margadant, A Roth, A Schneider, ...
Comparative Genomics: RECOMB 2005 International Workshop, RCG 2005, Dublin …, 2005
1002005
Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment
S Iantorno, K Gori, N Goldman, M Gil, C Dessimoz
Multiple sequence alignment methods, 59-73, 2014
652014
Querying knowledge graphs in natural language
S Liang, K Stockinger, TM de Farias, M Anisimova, M Gil
Journal of big Data 8 (1), 3, 2021
522021
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
512016
Enabling semantic queries across federated bioinformatics databases
AC Sima, T Mendes de Farias, E Zbinden, M Anisimova, M Gil, ...
Database 2019, baz106, 2019
452019
Progressive multiple sequence alignment with indel evolution
M Maiolo, X Zhang, M Gil, M Anisimova
BMC bioinformatics 19, 1-8, 2018
282018
Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
G Tan, M Gil, AP Löytynoja, N Goldman, C Dessimoz
Proceedings of the National Academy of Sciences 112 (2), E99-E100, 2015
212015
The cerebellum chip: an analog VLSI implementation of a cerebellar model of classical conditioning
C Hofstötter, M Gil, K Eng, G Indiveri, M Mintz, J Kramer, P Verschure
Advances in neural information processing systems 17, 2004
192004
Semantic integration and enrichment of heterogeneous biological databases
AC Sima, K Stockinger, TM de Farias, M Gil
Evolutionary Genomics: Statistical and Computational Methods, 655-690, 2019
182019
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
C Dessimoz, M Gil, A Schneider, GH Gonnet
BMC bioinformatics 7, 1-11, 2006
122006
Covariance of maximum likelihood evolutionary distances between sequences aligned pairwise
C Dessimoz, M Gil
BMC evolutionary biology 8, 1-9, 2008
62008
ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process
M Maiolo, L Gatti, D Frei, T Leidi, M Gil, M Anisimova
BMC bioinformatics 22, 1-12, 2021
52021
Accelerating phylogeny-aware alignment with indel evolution using short time Fourier transform
M Maiolo, S Ulzega, M Gil, M Anisimova
NAR Genomics and Bioinformatics 2 (4), lqaa092, 2020
52020
A repetition test for pseudo-random number generators
M Gil, GH Gonnet, WP Petersen
Monte Carlo methods and applications 12 (5), 385-393, 2006
52006
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Articles 1–20