Jonathan Alvarsson
Jonathan Alvarsson
Verified email at farmbio.uu.se
TitleCited byYear
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching
EL Willighagen, JW Mayfield, J Alvarsson, A Berg, L Carlsson, ...
Journal of Cheminformatics 9 (1), 33, 2017
692017
Open data, open source and open standards in chemistry: the Blue Obelisk five years on
NM O'Boyle, R Guha, EL Willighagen, SE Adams, J Alvarsson, JC Bradley, ...
Journal of cheminformatics 3 (1), 37, 2011
652011
Bioclipse 2: A scriptable integration platform for the life sciences
O Spjuth, J Alvarsson, A Berg, M Eklund, S Kuhn, C Mäsak, G Torrance, ...
BMC bioinformatics 10 (1), 397, 2009
632009
Ligand-based target prediction with signature fingerprints
J Alvarsson, M Eklund, O Engkvist, O Spjuth, L Carlsson, JES Wikberg, ...
Journal of chemical information and modeling 54 (10), 2647-2653, 2014
352014
Linking the resource description framework to cheminformatics and proteochemometrics
EL Willighagen, J Alvarsson, A Andersson, M Eklund, S Lampa, M Lapins, ...
Journal of Biomedical Semantics 2 (1), S6, 2011
302011
Ex vivo assessment of drug activity in patient tumor cells as a basis for tailored cancer therapy
K Blom, P Nygren, J Alvarsson, R Larsson, CR Andersson
Journal of laboratory automation 21 (1), 178-187, 2016
202016
Benchmarking study of parameter variation when using signature fingerprints together with support vector machines
J Alvarsson, M Eklund, C Andersson, L Carlsson, O Spjuth, JES Wikberg
Journal of chemical information and modeling 54 (11), 3211-3217, 2014
192014
Large-scale ligand-based predictive modelling using support vector machines
J Alvarsson, S Lampa, W Schaal, C Andersson, JES Wikberg, O Spjuth
Journal of cheminformatics 8 (1), 39, 2016
142016
Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles
S Lampa, J Alvarsson, O Spjuth
Journal of cheminformatics 8 (1), 67, 2016
142016
Introduction to pharmaceutical bioinformatics
J Wikberg, M Eklund, E Willighagen, O Spjuth, M Lapins, O Engkvist, ...
Oakleaf Academic, 2010
112010
Bioclipse-R: integrating management and visualization of life science data with statistical analysis
O Spjuth, V Georgiev, L Carlsson, J Alvarsson, A Berg, E Willighagen, ...
Bioinformatics 29 (2), 286-289, 2012
102012
Scaling predictive modeling in drug development with cloud computing
BT Moghadam, J Alvarsson, M Holm, M Eklund, L Carlsson, O Spjuth
Journal of chemical information and modeling 55 (1), 19-25, 2015
92015
Open source drug discovery with bioclipse
O Spjuth, L Carlsson, J Alvarsson, V Georgiev, E Willighagen, M Eklund
Current topics in medicinal chemistry 12 (18), 1980-1986, 2012
92012
A confidence predictor for logD using conformal regression and a support-vector machine
M Lapins, S Arvidsson, S Lampa, A Berg, W Schaal, J Alvarsson, O Spjuth
Journal of cheminformatics 10 (1), 17, 2018
82018
Brunn: An open source laboratory information system for microplates with a graphical plate layout design process
J Alvarsson, C Andersson, O Spjuth, R Larsson, JES Wikberg
BMC bioinformatics 12 (1), 179, 2011
72011
Predicting off-target binding profiles with confidence using conformal prediction
S Lampa, J Alvarsson, M Shane, S Arvidsson, A Berg, E Ahlberg, O Spjuth
Frontiers in pharmacology 9, 1256, 2018
42018
SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines
S Lampa, M Dahlö, J Alvarsson, O Spjuth
GigaScience 8 (5), giz044, 2019
32019
Evaluating parameters for ligand-based modeling with random forest on sparse data sets
A Kensert, J Alvarsson, U Norinder, O Spjuth
Journal of cheminformatics 10 (1), 49, 2018
22018
Ligand-based Methods for Data Management and Modelling
J Alvarsson
Acta Universitatis Upsaliensis, 2015
12015
SciPipe—Turning Scientific Workflows into Computer Programs
S Lampa, M Dahlö, J Alvarsson, O Spjuth
Computing in Science & Engineering 21 (3), 109-113, 2019
2019
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Articles 1–20