THOMAS-CHOLLIER Morgane
THOMAS-CHOLLIER Morgane
associate professor, Ecole Normale Supérieure Paris
Geverifieerd e-mailadres voor biologie.ens.fr
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RSAT: regulatory sequence analysis tools
M Thomas-Chollier, O Sand, JV Turatsinze, R Janky, M Defrance, ...
Nucleic acids research 36 (suppl_2), W119-W127, 2008
3122008
RSAT 2011: regulatory sequence analysis tools
M Thomas-Chollier, M Defrance, A Medina-Rivera, O Sand, C Herrmann, ...
Nucleic acids research 39 (suppl_2), W86-W91, 2011
2722011
Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics
E Simionato, V Ledent, G Richards, M Thomas-Chollier, P Kerner, ...
BMC evolutionary biology 7 (1), 1-18, 2007
2702007
Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules
JV Turatsinze, M Thomas-Chollier, M Defrance, J Van Helden
Nature protocols 3 (10), 1578-1588, 2008
2622008
RSAT 2015: regulatory sequence analysis tools
A Medina-Rivera, M Defrance, O Sand, C Herrmann, ...
Nucleic acids research 43 (W1), W50-W56, 2015
2362015
RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets
M Thomas-Chollier, C Herrmann, M Defrance, O Sand, D Thieffry, ...
Nucleic acids research 40 (4), e31-e31, 2012
2312012
Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs
M Thomas-Chollier, A Hufton, M Heinig, S O'keeffe, N El Masri, HG Roider, ...
Nature protocols 6 (12), 1860-1869, 2011
1862011
RSAT 2018: regulatory sequence analysis tools 20th anniversary
NTT Nguyen, B Contreras-Moreira, JA Castro-Mondragon, ...
Nucleic acids research 46 (W1), W209-W214, 2018
1202018
A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs
M Thomas-Chollier, E Darbo, C Herrmann, M Defrance, D Thieffry, ...
Nature protocols 7 (8), 1551-1568, 2012
1092012
ChIP-exo signal associated with DNA-binding motifs provide insights into the genomic binding of the glucocorticoid receptor and cooperating transcription factors
MTCSHM Stephan R. Starick, Jonas Ibn-Salem, Marcel Jurk, Céline Hernandez ...
Genome Research, 2015
1082015
Logical modeling of lymphoid and myeloid cell specification and transdifferentiation
S Collombet, C van Oevelen, JLS Ortega, W Abou-Jaoudé, B Di Stefano, ...
Proceedings of the National Academy of Sciences 114 (23), 5792-5799, 2017
772017
Theoretical and empirical quality assessment of transcription factor-binding motifs
A Medina-Rivera, C Abreu-Goodger, M Thomas-Chollier, H Salgado, ...
Nucleic acids research 39 (3), 808-824, 2011
712011
Mitigating anticipated effects of systematic errors supports sister-group relationship between Xenacoelomorpha and Ambulacraria
H Philippe, AJ Poustka, M Chiodin, KJ Hoff, C Dessimoz, B Tomiczek, ...
Current Biology 29 (11), 1818-1826. e6, 2019
602019
RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections
JA Castro-Mondragon, S Jaeger, D Thieffry, M Thomas-Chollier, ...
Nucleic acids research 45 (13), e119-e119, 2017
602017
A naturally occuring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms
M Thomas-Chollier, LC Watson, SB Cooper, MA Pufall, JS Liu, K Borzym, ...
Proceedings of the National Academy of Sciences 110 (44), 17826-17831, 2013
572013
Molecular insights into the origin of the Hox-TALE patterning system
B Hudry, M Thomas-Chollier, Y Volovik, M Duffraisse, A Dard, D Frank, ...
Elife 3, e01939, 2014
522014
Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity
S Schöne, M Jurk, MB Helabad, I Dror, I Lebars, B Kieffer, P Imhof, ...
Nature communications 7 (1), 1-13, 2016
482016
Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation
MI Love, MR Huska, M Jurk, R Schöpflin, SR Starick, K Schwahn, ...
Nucleic acids research 45 (4), 1805-1819, 2017
392017
A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution
M Thomas-Chollier, V Ledent, L Leyns, M Vervoort
BMC evolutionary biology 10 (1), 1-11, 2010
342010
Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4+ T cell activation
O Rodríguez-Jorge, LA Kempis-Calanis, W Abou-Jaoudé, ...
Science signaling 12 (577), 2019
292019
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