| Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement BJ Walker, T Abeel, T Shea, M Priest, A Abouelliel, S Sakthikumar, ... PloS one 9 (11), e112963, 2014 | 7464 | 2014 |
| Robust feature selection using ensemble feature selection techniques Y Saeys, T Abeel, Y Van de Peer Machine Learning and Knowledge Discovery in Databases: European Conference …, 2008 | 890 | 2008 |
| Robust biomarker identification for cancer diagnosis with ensemble feature selection methods T Abeel, T Helleputte, Y Van de Peer, P Dupont, Y Saeys Bioinformatics 26 (3), 392-398, 2010 | 745 | 2010 |
| The Mycobacterium tuberculosis regulatory network and hypoxia JE Galagan, K Minch, M Peterson, A Lyubetskaya, E Azizi, L Sweet, ... Nature 499 (7457), 178-183, 2013 | 486 | 2013 |
| Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018 | 345 | 2018 |
| Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates … KA Cohen, T Abeel, A Manson McGuire, CA Desjardins, V Munsamy, ... PLoS medicine 12 (9), e1001880, 2015 | 310 | 2015 |
| Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance AL Manson, KA Cohen, T Abeel, CA Desjardins, DT Armstrong, ... Nature genetics 49 (3), 395-402, 2017 | 301 | 2017 |
| Generic eukaryotic core promoter prediction using structural features of DNA T Abeel, Y Saeys, E Bonnet, P Rouzé, Y Van de Peer Genome research 18 (2), 310-323, 2008 | 250 | 2008 |
| ANGUSTIFOLIA3 Binds to SWI/SNF Chromatin Remodeling Complexes to Regulate Transcription during Arabidopsis Leaf Development L Vercruyssen, A Verkest, N Gonzalez, KS Heyndrickx, D Eeckhout, ... The Plant Cell 26 (1), 210-229, 2014 | 225 | 2014 |
| Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance CA Desjardins, KA Cohen, V Munsamy, T Abeel, K Maharaj, BJ Walker, ... Nature genetics 48 (5), 544-551, 2016 | 196 | 2016 |
| Java-ml: A machine learning library T Abeel, Y Van de Peer, Y Saeys Journal of Machine Learning Research 10, 931-934, 2009 | 196 | 2009 |
| ORCAE: online resource for community annotation of eukaryotes L Sterck, K Billiau, T Abeel, P Rouze, Y Van de Peer Nature methods 9 (11), 1041-1041, 2012 | 178 | 2012 |
| GenomeView: a next-generation genome browser T Abeel, T Van Parys, Y Saeys, J Galagan, Y Van de Peer Nucleic Acids Research 40 (2), e12-e12, 2012 | 164 | 2012 |
| Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development JW Holder, JC Ulrich, AC DeBono, PA Godfrey, CA Desjardins, J Zucker, ... PLoS Genetics 7 (9), e1002219, 2011 | 152 | 2011 |
| Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: progress, promise, and challenges KA Cohen, AL Manson, CA Desjardins, T Abeel, AM Earl Genome medicine 11 (1), 45, 2019 | 140 | 2019 |
| Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis AM McGuire, B Weiner, ST Park, I Wapinski, S Raman, G Dolganov, ... BMC genomics 13, 1-27, 2012 | 113 | 2012 |
| Evolution of Invasion in a Diverse Set of Fusobacterium Species A Manson McGuire, K Cochrane, AD Griggs, BJ Haas, T Abeel, Q Zeng, ... MBio 5 (6), 10.1128/mbio. 01864-14, 2014 | 107* | 2014 |
| ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles T Abeel, Y Saeys, P Rouzé, Y Van de Peer Bioinformatics 24 (13), i24-i31, 2008 | 104 | 2008 |
| Toward a gold standard for promoter prediction evaluation T Abeel, Y Van de Peer, Y Saeys Bioinformatics 25 (12), i313-i320, 2009 | 102 | 2009 |
| Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D AN Salazar, AR Gorter de Vries, M van den Broek, M Wijsman, ... FEMS Yeast Research 17 (7), fox074, 2017 | 100 | 2017 |
Ashlee EarlBroad Institute of MIT & HarvardVerified email at broadinstitute.org
