Thomas Abeel
Thomas Abeel
Associate Professor at TU Delft - Visiting Scientist at Broad Institute of MIT and Harvard
Verified email at - Homepage
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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement
BJ Walker, T Abeel, T Shea, M Priest, A Abouelliel, S Sakthikumar, ...
PloS one 9 (11), e112963, 2014
Robust feature selection using ensemble feature selection techniques
Y Saeys, T Abeel, Y Van de Peer
Machine Learning and Knowledge Discovery in Databases: European Conference …, 2008
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods
T Abeel, T Helleputte, Y Van de Peer, P Dupont, Y Saeys
Bioinformatics 26 (3), 392-398, 2010
The Mycobacterium tuberculosis regulatory network and hypoxia
JE Galagan, K Minch, M Peterson, A Lyubetskaya, E Azizi, L Sweet, ...
Nature 499 (7457), 178-183, 2013
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates …
KA Cohen, T Abeel, A Manson McGuire, CA Desjardins, V Munsamy, ...
PLoS medicine 12 (9), e1001880, 2015
Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance
AL Manson, KA Cohen, T Abeel, CA Desjardins, DT Armstrong, ...
Nature genetics 49 (3), 395-402, 2017
Generic eukaryotic core promoter prediction using structural features of DNA
T Abeel, Y Saeys, E Bonnet, P Rouzé, Y Van de Peer
Genome research 18 (2), 310-323, 2008
ANGUSTIFOLIA3 Binds to SWI/SNF Chromatin Remodeling Complexes to Regulate Transcription during Arabidopsis Leaf Development
L Vercruyssen, A Verkest, N Gonzalez, KS Heyndrickx, D Eeckhout, ...
The Plant Cell 26 (1), 210-229, 2014
Java-ml: A machine learning library
T Abeel, Y Van de Peer, Y Saeys
Journal of Machine Learning Research 10, 931-934, 2009
Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance
CA Desjardins, KA Cohen, V Munsamy, T Abeel, K Maharaj, BJ Walker, ...
Nature genetics 48 (5), 544-551, 2016
ORCAE: online resource for community annotation of eukaryotes
L Sterck, K Billiau, T Abeel, P Rouze, Y Van de Peer
Nature methods 9 (11), 1041-1041, 2012
GenomeView: a next-generation genome browser
T Abeel, T Van Parys, Y Saeys, J Galagan, Y Van de Peer
Nucleic Acids Research 40 (2), e12-e12, 2012
Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development
JW Holder, JC Ulrich, AC DeBono, PA Godfrey, CA Desjardins, J Zucker, ...
PLoS Genetics 7 (9), e1002219, 2011
Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: progress, promise, and challenges
KA Cohen, AL Manson, CA Desjardins, T Abeel, AM Earl
Genome medicine 11 (1), 45, 2019
Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis
AM McGuire, B Weiner, ST Park, I Wapinski, S Raman, G Dolganov, ...
BMC genomics 13, 1-27, 2012
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles
T Abeel, Y Saeys, P Rouzé, Y Van de Peer
Bioinformatics 24 (13), i24-i31, 2008
Evolution of Invasion in a Diverse Set of Fusobacterium Species
A Manson McGuire, K Cochrane, AD Griggs, BJ Haas, T Abeel, Q Zeng, ...
MBio 5 (6), 10.1128/mbio. 01864-14, 2014
Toward a gold standard for promoter prediction evaluation
T Abeel, Y Van de Peer, Y Saeys
Bioinformatics 25 (12), i313-i320, 2009
Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D
AN Salazar, AR Gorter de Vries, M van den Broek, M Wijsman, ...
FEMS Yeast Research 17 (7), fox074, 2017
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