Thomas Abeel
Thomas Abeel
Associate Professor at TU Delft - Visiting Scientist at Broad Institute of MIT and Harvard
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement
BJ Walker, T Abeel, T Shea, M Priest, A Abouelliel, S Sakthikumar, ...
PloS one 9 (11), e112963, 2014
20762014
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods
T Abeel, T Helleputte, Y Van de Peer, P Dupont, Y Saeys
Bioinformatics 26 (3), 392-398, 2010
5322010
Robust feature selection using ensemble feature selection techniques
Y Saeys, T Abeel, Y Van de Peer
Joint European Conference on Machine Learning and Knowledge Discovery iná…, 2008
5182008
The Mycobacterium tuberculosis regulatory network and hypoxia
JE Galagan, K Minch, M Peterson, A Lyubetskaya, E Azizi, L Sweet, ...
Nature 499 (7457), 178-183, 2013
3302013
Generic eukaryotic core promoter prediction using structural features of DNA
T Abeel, Y Saeys, E Bonnet, P RouzÚ, Y Van de Peer
Genome research 18 (2), 310-323, 2008
2032008
Evolution of extensively drug-resistant tuberculosis over four decades: whole genome sequencing and dating analysis of Mycobacterium tuberculosis isolates from KwaZulu-Natal
KA Cohen, T Abeel, AM McGuire, CA Desjardins, V Munsamy, TP Shea, ...
PLoS Med 12 (9), e1001880, 2015
1772015
Java-ml: A machine learning library
T Abeel, Y Van de Peer, Y Saeys
Journal of Machine Learning Research 10, 931-934, 2009
1632009
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
1352018
Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance
AL Manson, KA Cohen, T Abeel, CA Desjardins, DT Armstrong, ...
Nature genetics 49 (3), 395, 2017
1302017
GenomeView: a next-generation genome browser
T Abeel, T Van Parys, Y Saeys, J Galagan, Y Van de Peer
Nucleic Acids Research 40 (2), e12-e12, 2012
1252012
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development
L Vercruyssen, A Verkest, N Gonzalez, KS Heyndrickx, D Eeckhout, ...
The Plant Cell 26 (1), 210-229, 2014
1202014
Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance
CA Desjardins, KA Cohen, V Munsamy, T Abeel, K Maharaj, BJ Walker, ...
Nature genetics 48 (5), 544-551, 2016
1162016
ORCAE: online resource for community annotation of eukaryotes
L Sterck, K Billiau, T Abeel, P Rouze, Y Van de Peer
Nature methods 9 (11), 1041-1041, 2012
1092012
Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development
JW Holder, JC Ulrich, AC DeBono, PA Godfrey, CA Desjardins, J Zucker, ...
PLoS Genet 7 (9), e1002219, 2011
1082011
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles
T Abeel, Y Saeys, P RouzÚ, Y Van de Peer
Bioinformatics 24 (13), i24-i31, 2008
972008
Toward a gold standard for promoter prediction evaluation
T Abeel, Y Van de Peer, Y Saeys
Bioinformatics 25 (12), i313-i320, 2009
912009
Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis
AM McGuire, B Weiner, ST Park, I Wapinski, S Raman, G Dolganov, ...
BMC genomics 13 (1), 120, 2012
712012
Translation initiation site prediction on a genomic scale: beauty in simplicity
Y Saeys, T Abeel, S Degroeve, Y Van de Peer
Bioinformatics 23 (13), i418-i423, 2007
492007
Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN. PK113-7D
AN Salazar, AR Gorter de Vries, M van den Broek, M Wijsman, ...
FEMS yeast research 17 (7), 2017
472017
Evolution of invasion in a diverse set of Fusobacterium species
AM McGuire, K Cochrane, AD Griggs, BJ Haas, T Abeel, Q Zeng, JB Nice, ...
MBio 5 (6), 2014
462014
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Articles 1–20