Danielle Goudeau
Danielle Goudeau
Research Associate, Lawrence Berkeley Lab
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Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
C Rinke, J Lee, N Nath, D Goudeau, B Thompson, N Poulton, E Dmitrieff, ...
Nature protocols 9 (5), 1038-1048, 2014
Visualizing in situ translational activity for identifying and sorting slow-growing archaeal− bacterial consortia
R Hatzenpichler, SA Connon, D Goudeau, RR Malmstrom, T Woyke, ...
Proceedings of the National Academy of Sciences 113 (28), E4069-E4078, 2016
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
EA Eloe-Fadrosh, D Paez-Espino, J Jarett, PF Dunfield, BP Hedlund, ...
Nature communications 7 (1), 10476, 2016
Transcriptome Analysis of Escherichia coli O157:H7 Exposed to Lysates of Lettuce Leaves
JL Kyle, CT Parker, D Goudeau, MT Brandl
Applied and Environmental Microbiology 76 (5), 1375-1387, 2010
Hidden diversity of soil giant viruses
F Schulz, L Alteio, D Goudeau, EM Ryan, FB Yu, RR Malmstrom, ...
Nature communications 9 (1), 4881, 2018
The Salmonella transcriptome in lettuce and cilantro soft rot reveals a niche overlap with the animal host intestine
DM Goudeau, CT Parker, Y Zhou, S Sela, Y Kroupitski, MT Brandl
Applied and environmental microbiology 79 (1), 250-262, 2013
Autoantibody levels in myositis patients correlate with clinical response during B cell depletion with rituximab
R Aggarwal, CV Oddis, D Goudeau, D Koontz, Z Qi, AM Reed, ...
Rheumatology 55 (6), 991-999, 2016
Probing the active fraction of soil microbiomes using BONCAT-FACS
E Couradeau, J Sasse, D Goudeau, N Nath, TC Hazen, BP Bowen, ...
Nature communications 10 (1), 2770, 2019
Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea
GL Chadwick, CT Skennerton, R Laso-Pérez, AO Leu, DR Speth, H Yu, ...
PLoS biology 20 (1), e3001508, 2022
A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles
JM Volland, S Gonzalez-Rizzo, O Gros, T Tyml, N Ivanova, F Schulz, ...
Science 376 (6600), 1453-1458, 2022
Complementary metagenomic approaches improve reconstruction of microbial diversity in a forest soil
LV Alteio, F Schulz, R Seshadri, N Varghese, W Rodriguez-Reillo, E Ryan, ...
Msystems 5 (2), e00768-19, 2020
Anti-signal recognition particle autoantibody ELISA validation and clinical associations
R Aggarwal, CV Oddis, D Goudeau, N Fertig, I Metes, C Stephens, Z Qi, ...
Rheumatology 54 (7), 1194-1199, 2015
A pipeline for targeted metagenomics of environmental bacteria
A Grieb, RM Bowers, M Oggerin, D Goudeau, J Lee, RR Malmstrom, ...
Microbiome 8 (1), 1-17, 2020
Optimizing de novo genome assembly from PCR-amplified metagenomes
S Roux, G Trubl, D Goudeau, N Nath, E Couradeau, NA Ahlgren, Y Zhan, ...
PeerJ 7, e6902, 2019
Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
M Berg, D Goudeau, C Olmsted, KD McMahon, S Yitbarek, JL Thweatt, ...
The ISME journal 15 (6), 1569-1584, 2021
Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane
LJ McKay, HJ Smith, EP Barnhart, HD Schweitzer, RR Malmstrom, ...
The ISME journal 16 (4), 915-926, 2022
Anti-transcription intermediary factor 1-gamma autoantibody ELISA development and validation
R Aggarwal, CV Oddis, D Goudeau, N Fertig, I Metes, C Stephens, Z Qi, ...
Rheumatology 53 (3), 433-437, 2014
Hidden diversity of soil giant viruses. Nat Commun 9: 4881
F Schulz, L Alteio, D Goudeau, EM Ryan, FB Yu, RR Malmstrom, ...
Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
RM Bowers, S Nayfach, F Schulz, SP Jungbluth, IA Ruhl, A Sheremet, ...
The ISME journal 16 (5), 1337-1347, 2022
Subsurface hydrocarbon degradation strategies in low-and high-sulfate coal seam communities identified with activity-based metagenomics
HD Schweitzer, HJ Smith, EP Barnhart, LJ McKay, R Gerlach, ...
npj Biofilms and Microbiomes 8 (1), 7, 2022
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