| Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics RG Parra, NP Schafer, LG Radusky, MY Tsai, AB Guzovsky, PG Wolynes, ... Nucleic acids research 44 (W1), W356-W360, 2016 | 217 | 2016 |
| Protein frustratometer: a tool to localize energetic frustration in protein molecules M Jenik, RG Parra, LG Radusky, A Turjanski, PG Wolynes, DU Ferreiro Nucleic acids research 40 (W1), W348-W351, 2012 | 170 | 2012 |
| RepeatsDB: a database of tandem repeat protein structures T Di Domenico, E Potenza, I Walsh, R Gonzalo Parra, M Giollo, ... Nucleic acids research 42 (D1), D352-D357, 2014 | 70 | 2014 |
| Local frustration around enzyme active sites MI Freiberger, AB Guzovsky, PG Wolynes, RG Parra*, DU Ferreiro* Proceedings of the National Academy of Sciences 116 (10), 4037-4043 …, 2019 | 59 | 2019 |
| Structural and energetic characterization of the ankyrin repeat protein family RG Parra, R Espada, N Verstraete, DU Ferreiro PLoS computational biology 11 (12), e1004659, 2015 | 59 | 2015 |
| PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes N Papadopoulos, RG Parra, J Söding Bioinformatics 35 (18), 3517-3519, 2019 | 51 | 2019 |
| PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022 | 37 | 2022 |
| Detecting repetitions and periodicities in proteins by tiling the structural space RG Parra, R Espada, IE Sánchez, MJ Sippl, DU Ferreiro The Journal of Physical Chemistry B 117 (42), 12887-12897, 2013 | 36 | 2013 |
| FrustratometeR: an R-package to compute Local frustration in protein structures, point mutants and MD simulations AO Rausch, MI Freiberger, CO Leonetti, DM Luna, LG Radusky, ... Bioinformatics, btab176, 2021 | 34 | 2021 |
| Reconstructing complex lineage trees from scRNA-seq data using MERLoT RG Parra*, N Papadopoulos, L Ahumada-Arranz, J El Kholtei, ... Nucleic Acids Research, gkz706, 261768 (* corresponding authors), 2019 | 32 | 2019 |
| Highlights from the 1st ISCB Latin American Student Council Symposium 2014 RG Parra, FL Simonetti, M Hasenahuer, G Olguin-Orellana, S Avinash K BMC bioinformatics 16 (3), A1, 2015 | 29* | 2015 |
| Capturing coevolutionary signals in repeat proteins R Espada, RG Parra, T Mora, AM Walczak, DU Ferreiro BMC Bioinformatics 16, 207, 2015 | 27 | 2015 |
| Repeat Proteins challenge the concept of structural domains R Espada*, RG Parra*, MJ Sippl, T Mora, AM Walczak, DU Ferreiro, ... Biochemical Society Transactions 43 (5), 844-849, 2015 | 25 | 2015 |
| The upside of failure: how regional student groups learn from their mistakes T Mishra, RG Parra, T Abeel PLoS Computational Biology 10 (8), e1003768, 2014 | 24 | 2014 |
| Impacts of biomedical hashtag-based Twitter campaign:# DHPSP utilization for promotion of open innovation in digital health, patient safety, and personalized medicine M Kletecka-Pulker, H Mondal, D Wang, RG Parra, AY Maigoro, S Lee, ... Current Research in Biotechnology 3, 146-153, 2021 | 20 | 2021 |
| INSECT: IN-silico SEarch for Co-occurring Transcription factors CO Rohr*, RG Parra*, P Yankilevich, C Perez-Castro, ... Bioinformatics 29 (22), 2852-2858, 2013 | 20 | 2013 |
| Reflections on a journey: a retrospective of the ISCB Student Council symposium series M Hassan, AA Namasivayam, D DeBlasio, N Fatima, B Siranosian, ... BMC bioinformatics 19, 1-8, 2018 | 18 | 2018 |
| INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction RG Parra*, CO Rohr*, D Koile, C Perez-Castro, P Yankilevich, ... Bioinformatics, btv726, 2015 | 17 | 2015 |
| Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers S Shome, RG Parra, N Fatima, AM Monzon, B Cuypers, Y Moosa, ... F1000Research 8, 2019 | 13 | 2019 |
| Local energetic frustration conservation in protein families and superfamilies MI Freiberger, V Ruiz-Serra, C Pontes, M Romero-Durana, ... Nature Communications 14 (1), 8379, 2023 | 10* | 2023 |
Diego U. FerreiroCONICET, FCEyN, Universidad de Buenos AiresVerified email at qb.fcen.uba.ar
