R. Gonzalo Parra

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Diego U. FerreiroCONICET, FCEyN, Universidad de Buenos AiresVerified email at qb.fcen.uba.ar
Peter G. WolynesBullard-Welch Foundation Professor of Science, Professor of Chemistry, Professor of PhysicsVerified email at rice.edu
Rocío EspadaPostdoc at ESPCIVerified email at espci.fr
Leandro RaduskyManas.techVerified email at manas.tech
Maria Ines Freiberger (ORCID 0000-0...Laboratorio de Fisiología de Proteínas, Facultad de Ciencias Exactas Físicas y NaturalesVerified email at qb.fcen.uba.ar
Alexander Miguel MonzonResearcher (RTDA), Department of Information Engineering, University of PadovaVerified email at unipd.it
Aleksandra WalczakLaboratoire de physique théorique, École normale supérieureVerified email at lpt.ens.fr
Thierry MoraLaboratoire de physique de l'École normale supérieure, Centre national de recherche scientifiqueVerified email at phys.ens.fr
Johannes SödingMax-Planck-Institute for Multidisciplinary Sciences, GöttingenVerified email at mpinat.mpg.de
Nikolaos PapadopoulosSenior Scientist - BioinformaticsVerified email at univie.ac.at
Patricio YankilevichInstituto de Investigación en Biomedicina de Buenos Aires.Verified email at ibioba-mpsp-conicet.gov.ar
Silvio TosattoFull Professor of Bioinformatics, Department of Biomedical Sciences, University of PaduaVerified email at unipd.it
Jakob El KholteiBiozentrum Basel, SwitzerlandVerified email at unibas.ch
Barbara TreutleinETH Zurich, D-BSSEVerified email at bsse.ethz.ch
Cesar A. Ramirez-SarmientoAssociate Professor, Pontificia Universidad Catolica de ChileVerified email at uc.cl
Oliver StegleGerman Cancer Research Center (DKFZ) & EMBL HeidelbergVerified email at dkfz.de
Aurelie ErnstGerman Cancer Research CenterVerified email at dkfz.de
Vitor Barbanti Pereira LeiteProfessor Livre-Docente, Universidade Estadual PaulistaVerified email at unesp.br
Marcelo MartiProf of Biological Chemistry, University of Buenos AiresVerified email at qi.fcen.uba.ar
Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es

R. Gonzalo Parra

Senior Postdoctoral Researcher, Barcelona Supercomputing Center

Verified email at bsc.es - Homepage

bioinformatics computational biophysics protein structures transcriptional regulation single cell omics


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Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics RG Parra, NP Schafer, LG Radusky, MY Tsai, AB Guzovsky, PG Wolynes, ... Nucleic acids research 44 (W1), W356-W360, 2016	176	2016
Protein frustratometer: a tool to localize energetic frustration in protein molecules M Jenik, RG Parra, LG Radusky, A Turjanski, PG Wolynes, DU Ferreiro Nucleic acids research 40 (W1), W348-W351, 2012	164	2012
RepeatsDB: a database of tandem repeat protein structures T Di Domenico, E Potenza, I Walsh, R Gonzalo Parra, M Giollo, ... Nucleic acids research 42 (D1), D352-D357, 2014	67	2014
Structural and energetic characterization of the ankyrin repeat protein family RG Parra, R Espada, N Verstraete, DU Ferreiro PLoS computational biology 11 (12), e1004659, 2015	51	2015
Local frustration around enzyme active sites MI Freiberger, AB Guzovsky, PG Wolynes, RG Parra, DU Ferreiro Proceedings of the National Academy of Sciences 116 (10), 4037-4043 …, 2019	44	2019
PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes N Papadopoulos, RG Parra, J Söding Bioinformatics 35 (18), 3517-3519, 2019	42	2019
Detecting repetitions and periodicities in proteins by tiling the structural space RG Parra, R Espada, IE Sánchez, MJ Sippl, DU Ferreiro The Journal of Physical Chemistry B 117 (42), 12887-12897, 2013	36	2013
Reconstructing complex lineage trees from scRNA-seq data using MERLoT RG Parra, N Papadopoulos, L Ahumada-Arranz, J El Kholtei, ... Nucleic Acids Research, gkz706, 261768 ( corresponding authors), 2019	31	2019
PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022	30	2022
Highlights from the 1st ISCB Latin American Student Council Symposium 2014 RG Parra, FL Simonetti, M Hasenahuer, G Olguin-Orellana, S Avinash K BMC bioinformatics 16 (3), A1, 2015	27*	2015
Capturing coevolutionary signals in repeat proteins R Espada, RG Parra, T Mora, AM Walczak, DU Ferreiro BMC Bioinformatics 16, 207, 2015	26	2015
Repeat Proteins challenge the concept of structural domains R Espada, RG Parra, MJ Sippl, T Mora, AM Walczak, DU Ferreiro, ... Biochemical Society Transactions 43 (5), 844-849, 2015	25	2015
The upside of failure: how regional student groups learn from their mistakes T Mishra, RG Parra, T Abeel PLoS Computational Biology 10 (8), e1003768, 2014	22	2014
FrustratometeR: an R-package to compute Local frustration in protein structures, point mutants and MD simulations AO Rausch, MI Freiberger, CO Leonetti, DM Luna, LG Radusky, ... Bioinformatics, btab176, 2021	19	2021
INSECT: IN-silico SEarch for Co-occurring Transcription factors CO Rohr, RG Parra, P Yankilevich, C Perez-Castro, ... Bioinformatics 29 (22), 2852-2858, 2013	19	2013
Impacts of biomedical hashtag-based Twitter campaign:# DHPSP utilization for promotion of open innovation in digital health, patient safety, and personalized medicine M Kletecka-Pulker, H Mondal, D Wang, RG Parra, AY Maigoro, S Lee, ... Current Research in Biotechnology 3, 146-153, 2021	16	2021
Reflections on a journey: a retrospective of the ISCB Student Council symposium series M Hassan, AA Namasivayam, D DeBlasio, N Fatima, B Siranosian, ... BMC bioinformatics 19 (12), 1-8, 2018	16	2018
INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction RG Parra, CO Rohr, D Koile, C Perez-Castro, P Yankilevich, ... Bioinformatics, btv726, 2015	16	2015
Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers S Shome, RG Parra, N Fatima, AM Monzon, B Cuypers, Y Moosa, ... F1000Research 8, 2019	10	2019
Inferring repeat-protein energetics from evolutionary information R Espada, RG Parra, T Mora, AM Walczak, DU Ferreiro PLoS computational biology 13 (6), e1005584, 2017	10	2017

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