| Applications of genome‐scale metabolic reconstructions MA Oberhardt, BØ Palsson, JA Papin Molecular systems biology 5 (1), 320, 2009 | 986 | 2009 |
| Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1 MA Oberhardt, J Puchałka, KE Fryer, VAP Martins dos Santos, JA Papin Journal of bacteriology 190 (8), 2790-2803, 2008 | 320 | 2008 |
| Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology J Puchałka, MA Oberhardt, M Godinho, A Bielecka, D Regenhardt, ... PLoS computational biology 4 (10), e1000210, 2008 | 303 | 2008 |
| Harnessing the landscape of microbial culture media to predict new organism–media pairings MA Oberhardt, R Zarecki, S Gronow, E Lang, HP Klenk, U Gophna, ... Nature communications 6 (1), 8493, 2015 | 164 | 2015 |
| Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis MA Oberhardt, J Puchałka, VAP Martins dos Santos, JA Papin PLoS computational biology 7 (3), e1001116, 2011 | 146 | 2011 |
| Predicting biological system objectives de novo from internal state measurements EP Gianchandani, MA Oberhardt, AP Burgard, CD Maranas, JA Papin BMC bioinformatics 9, 1-13, 2008 | 142 | 2008 |
| Metabolic network prediction of drug side effects I Shaked, MA Oberhardt, N Atias, R Sharan, E Ruppin Cell systems 2 (3), 209-213, 2016 | 104 | 2016 |
| Metabolic Network Analysis of Pseudomonas aeruginosa during Chronic Cystic Fibrosis Lung Infection MA Oberhardt, JB Goldberg, M Hogardt, JA Papin Journal of bacteriology 192 (20), 5534-5548, 2010 | 104 | 2010 |
| Flux balance analysis: interrogating genome-scale metabolic networks MA Oberhardt, AK Chavali, JA Papin Systems Biology, 61-80, 2009 | 78 | 2009 |
| Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations O Eilam, R Zarecki, M Oberhardt, LK Ursell, M Kupiec, R Knight, ... MBio 5 (4), 10.1128/mbio. 01526-14, 2014 | 52 | 2014 |
| Seasonality and clinical impact of human parainfluenza viruses P Maykowski, M Smithgall, P Zachariah, M Oberhardt, C Vargas, C Reed, ... Influenza and other respiratory viruses 12 (6), 706-716, 2018 | 50 | 2018 |
| Metabolically re-modeling the drug pipeline MA Oberhardt, K Yizhak, E Ruppin Current opinion in pharmacology 13 (5), 778-785, 2013 | 50 | 2013 |
| Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior SH Robertson, CK Smith, AL Langhans, SE McLinden, MA Oberhardt, ... BMC systems biology 1, 1-15, 2007 | 44 | 2007 |
| A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness R Zarecki, MA Oberhardt, L Reshef, U Gophna, E Ruppin PLoS computational biology 10 (7), e1003726, 2014 | 37 | 2014 |
| Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5’-Phosphate Production in E. coli MA Oberhardt, R Zarecki, L Reshef, F Xia, M Duran-Frigola, R Schreiber, ... PLoS computational biology 12 (1), e1004705, 2016 | 34 | 2016 |
| Epidemiology, clinical features, and resource utilization associated with respiratory syncytial virus in the community and hospital M Smithgall, P Maykowski, P Zachariah, M Oberhardt, CY Vargas, C Reed, ... Influenza and other respiratory viruses 14 (3), 247-256, 2020 | 30 | 2020 |
| Comparative incidence and burden of respiratory viruses associated with hospitalization in adults in New York City WD Sieling, CR Goldman, M Oberhardt, M Phillips, L Finelli, L Saiman Influenza and Other Respiratory Viruses 15 (5), 670-677, 2021 | 25 | 2021 |
| Palsson B0, Papin JA (2009) Applications of genome-scale metabolic reconstructions M Oberhardt Molecular systems biology 5 (320), 320, 0 | 19 | |
| A framework for improving characterization of obstetric hemorrhage using informatics data D Goffman, AM Friedman, JJ Sheen, A Kessler, D Vawdrey, R Green, ... Obstetrics & Gynecology 134 (6), 1317-1325, 2019 | 18 | 2019 |
| Data-driven metabolic pathway compositions enhance cancer survival prediction N Auslander, A Wagner, M Oberhardt, E Ruppin PLoS computational biology 12 (9), e1005125, 2016 | 14 | 2016 |
Jason PapinHarrison Distinguished Teaching Professor of Biomedical Engineering, University of VirginiaVerified email at virginia.edu
