Anne de Jong
Anne de Jong
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BAGEL3: automated identification of genes encoding bacteriocins and (non-) bactericidal posttranslationally modified peptides
AJ van Heel, A de Jong, M Montalban-Lopez, J Kok, OP Kuipers
Nucleic acids research 41 (W1), W448-W453, 2013
Mapping the pathways to staphylococcal pathogenesis by comparative secretomics
M Sibbald, AK Ziebandt, S Engelmann, M Hecker, A De Jong, ...
Microbiology and Molecular Biology Reviews 70 (3), 755-788, 2006
Mechanisms of atrial structural changes caused by stretch occurring before and during early atrial fibrillation
AM De Jong, AH Maass, SU Oberdorf-Maass, DJ Van Veldhuisen, ...
Cardiovascular research 89 (4), 754-765, 2011
BAGEL: a web-based bacteriocin genome mining tool
A de Jong, SAFT van Hijum, JJE Bijlsma, J Kok, OP Kuipers
Nucleic acids research 34 (suppl_2), W273-W279, 2006
Genome Engineering Reveals Large Dispensable Regions in Bacillus subtilis
H Westers, R Dorenbos, JM Van Dijl, J Kabel, T Flanagan, KM Devine, ...
Molecular Biology and Evolution 20 (12), 2076-2090, 2003
Signal peptidase I of Bacillus subtilis: patterns of conserved amino acids in prokaryotic and eukaryotic type I signal peptidases.
JM van Dijl, A De Jong, J Vehmaanperä, G Venema, S Bron
The EMBO Journal 11 (8), 2819-2828, 1992
BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins
AJ van Heel, A de Jong, C Song, JH Viel, J Kok, OP Kuipers
Nucleic acids research 46 (W1), W278-W281, 2018
BAGEL2: mining for bacteriocins in genomic data
A de Jong, AJ van Heel, J Kok, OP Kuipers
Nucleic acids research 38 (suppl_2), W647-W651, 2010
Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach
LW Hamoen, WK Smits, A Jong, S Holsappel, OP Kuipers
Nucleic acids research 30 (24), 5517-5528, 2002
Evaluation of bottlenecks in the late stages of protein secretion in Bacillus subtilis
A Bolhuis, H Tjalsma, HE Smith, A De Jong, R Meima, G Venema, S Bron, ...
Applied and Environmental Microbiology 65 (7), 2934-2941, 1999
CodY of Streptococcus pneumoniae: link between nutritional gene regulation and colonization
WT Hendriksen, HJ Bootsma, S Estevão, T Hoogenboezem, A De Jong, ...
Journal of bacteriology 190 (2), 590-601, 2008
PePPER: a webserver for prediction of prokaryote promoter elements and regulons
A de Jong, H Pietersma, M Cordes, OP Kuipers, J Kok
BMC genomics 13 (1), 1-10, 2012
A novel scheme to assess factors involved in the reproducibility of DNA-microarray data
SAFT Van Hijum, A De Jong, RJS Baerends, HA Karsens, NE Kramer, ...
Genome Biology 6 (4), 1-35, 2005
Identification of the potential active site of the signal peptidase SipS of Bacillus subtilis: structural and functional similarities with LexA-like proteases
JM van Dijl, A de Jong, G Venema, S Bron
Journal of Biological Chemistry 270 (8), 3611-3618, 1995
LmrCD is a major multidrug resistance transporter in Lactococcus lactis
J Lubelski, A De Jong, R Van Merkerk, H Agustiandari, OP Kuipers, J Kok, ...
Molecular microbiology 61 (3), 771-781, 2006
Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data
RJS Baerends, WK Smits, A de Jong, LW Hamoen, J Kok, OP Kuipers
Genome biology 5 (5), 1-6, 2004
The endogenous Bacillus subtilis (natto) plasmids pTA1015 and pTA1040 contain signal peptidase‐encoding genes: identification of a new structural module on …
WJJ Meijer, A De Jong, G Bea, A Wisman, H Tjalsma, G Venema, S Bron, ...
Molecular microbiology 17 (4), 621-631, 1995
Bacillus subtilis can modulate its capacity and specificity for protein secretion through temporally controlled expression of the sipS gene for signal peptidase I
A Bolhuis, A Sorokin, V Azevedo, SD Ehrlich, PG Braun, A De Jong, ...
Molecular microbiology 22 (4), 605-618, 1996
Adaptation of Hansenula polymorpha to methanol: a transcriptome analysis
T van Zutphen, RJS Baerends, KA Susanna, A De Jong, OP Kuipers, ...
BMC genomics 11 (1), 1-12, 2010
Transcriptome analysis and related databases of Lactococcus lactis
OP Kuipers, A de Jong, RJS Baerends, SAFT van Hijum, AL Zomer, ...
Lactic Acid Bacteria: Genetics, Metabolism and Applications, 113-122, 2002
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