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Allison Regier
Allison Regier
Senior Bioinformatics Scientist, DNANexus, Inc
Verified email at dnanexus.com
Title
Cited by
Cited by
Year
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle
EF Kirkness, BJ Haas, W Sun, HR Braig, MA Perotti, JM Clark, SH Lee, ...
Proceedings of the National Academy of Sciences 107 (27), 12168-12173, 2010
5632010
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ...
Science 372 (6537), eabf7117, 2021
4152021
High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
M Byrska-Bishop, US Evani, X Zhao, AO Basile, HJ Abel, AA Regier, ...
Cell 185 (18), 3426-3440. e19, 2022
4082022
Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences
MKN Lawniczak, SJ Emrich, AK Holloway, AP Regier, M Olson, B White, ...
Science 330 (6003), 512-514, 2010
3112010
Mapping and characterization of structural variation in 17,795 human genomes
HJ Abel, DE Larson, AA Regier, C Chiang, I Das, KL Kanchi, RM Layer, ...
Nature 583 (7814), 83-89, 2020
2132020
Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects
AA Regier, Y Farjoun, DE Larson, O Krasheninina, HM Kang, ...
Nature communications 9 (1), 1-8, 2018
1852018
Automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
bioRxiv, 2022
96*2022
Genome modeling system: a knowledge management platform for genomics
M Griffith, OL Griffith, SM Smith, A Ramu, MB Callaway, AM Brummett, ...
PLoS computational biology 11 (7), e1004274, 2015
882015
Breakpoint structure of the Anopheles gambiae 2Rb chromosomal inversion
NF Lobo, DM Sangaré, AA Regier, KR Reidenbach, DA Bretz, ...
Malaria journal 9 (1), 1-9, 2010
452010
High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum
U Samarakoon, A Regier, A Tan, BA Desany, B Collins, JC Tan, ...
BMC genomics 12 (1), 1-14, 2011
352011
Association of structural variation with cardiometabolic traits in Finns
L Chen, HJ Abel, I Das, DE Larson, L Ganel, KL Kanchi, AA Regier, ...
The American Journal of Human Genetics 108 (4), 583-596, 2021
252021
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8, 2019
152019
Mitochondrial genome copy number measured by DNA sequencing in human blood is strongly associated with metabolic traits via cell-type composition differences
L Ganel, L Chen, R Christ, J Vangipurapu, E Young, I Das, K Kanchi, ...
Human genomics 15 (1), 1-17, 2021
132021
Mitochondrial genome copy number in human blood-derived DNA is strongly associated with insulin levels and related metabolic traits and primarily reflects cell-type composition …
L Ganel, L Chen, R Christ, J Vangipurapu, E Young, I Das, K Kanchi, ...
MedRxiv, 2020
12020
A Flexible Comparative Genomics Framework for Integrating Heterogeneous Sequence Data
AAP Regier
12011
Alignment and analysis of closely related genomes
A Regier, M Olson, SJ Emrich
International Conference on Bioinformatics and Computational Biology, 343-352, 2009
12009
Mosaicing videos to stream over multiple independent channels
C Boehnen, A Regier, D Thomas, S Chandra, P Flynn
Proceedings of the 17th NOSSDAV Conference, 2007
12007
Genomic and transcriptomic somatic alterations of hepatocellular carcinoma in non-cirrhotic livers
OL Griffith, Y Lin, M Griffith, J Hundal, A Regier, R Fulton, EM Brunt, ...
Cancer Research 74 (19_Supplement), 5181-5181, 2014
2014
EXAMINING THE FINE SCALE STRUCTURE OF THE CROSSOVER LANDSCAPE IN PLASMODIUM FALCIPARUM BY HIGH-THROUGHPUT ALLELE SCANNING
U Samarakoon, A Regier, A Tan, SJ Emrich, MT Ferdig
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE 83 (5), 281-281, 2010
2010
Challenges in working with draft genomes
AAP Regier
University of Notre Dame, 2008
2008
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Articles 1–20