| PlasClass improves plasmid sequence classification D Pellow, I Mizrahi, R Shamir PLoS computational biology 16 (4), e1007781, 2020 | 78 | 2020 |
| Improving the performance of minimizers and winnowing schemes G Marçais, D Pellow, D Bork, Y Orenstein, R Shamir, C Kingsford Bioinformatics 33 (14), i110-i117, 2017 | 67 | 2017 |
| SCAPP: an algorithm for improved plasmid assembly in metagenomes D Pellow, A Zorea, M Probst, O Furman, A Segal, I Mizrahi, R Shamir Microbiome 9 (1), 144, 2021 | 47 | 2021 |
| Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing Y Orenstein, D Pellow, G Marçais, R Shamir, C Kingsford PLoS computational biology 13 (10), e1005777, 2017 | 47 | 2017 |
| Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters D Pellow, D Filippova, C Kingsford Journal of Computational Biology 24 (6), 547-557, 2017 | 35 | 2017 |
| An open corpus of everyday documents for simplification tasks D Pellow, M Eskenazi Proceedings of the 3rd Workshop on Predicting and Improving Text Readability …, 2014 | 27 | 2014 |
| Compact Universal k-mer Hitting Sets Y Orenstein, D Pellow, G Marçais, R Shamir, C Kingsford International Workshop on Algorithms in Bioinformatics, 257-268, 2016 | 24 | 2016 |
| Parameterized syncmer schemes improve long-read mapping A Dutta, D Pellow, R Shamir PLOS Computational Biology 18 (10), e1010638, 2022 | 17 | 2022 |
| Data Set-Adaptive Minimizer Order Reduces Memory Usage in k-Mer Counting D Flomin, D Pellow, R Shamir Journal of Computational Biology 29 (8), 825-838, 2022 | 7 | 2022 |
| Efficient minimizer orders for large values of k using minimum decycling sets D Pellow, L Pu, B Ekim, L Kotlar, B Berger, R Shamir, Y Orenstein Genome Research 33 (7), 1154-1161, 2023 | 4 | 2023 |
| Tracking human process using crowd collaboration to enrich data D Pellow, M Eskenazi Proceedings of the AAAI Conference on Human Computation and Crowdsourcing 2 …, 2014 | 3 | 2014 |
| Plasmids in the human gut reveal neutral dispersal and recombination that is overpowered by inflammatory diseases A Zorea, D Pellow, L Levin, S Pilosof, J Friedman, R Shamir, I Mizrahi Nature Communications 15 (1), 3147, 2024 | | 2024 |
| Plasmid dispersal and recombination across human gut microbiomes is neutral, but overpowered by inflammatory diseases I Mizrahi, A Zorea, D Pellow, L Levin, S Pilosof, J Friedman, R Shamir | | 2023 |
| Using syncmers improves long-read mapping D Pellow, A Dutta, R Shamir bioRxiv, 2022 | | 2022 |
| Using syncmers improves long-read mapping A Dutta, D Pellow, R Shamir | | |
| Waterman Special Issue DAN FLOMIN, D PELLOW, RON SHAMIR | | |
Carl KingsfordProfessor, Computational Biology Department, School of Computer Science, CarnegieVerified email at cs.cmu.edu
