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rens holmer
rens holmer
Bioinformatics Group, Wageningen University
Verified email at wur.nl
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Cited by
Cited by
Year
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21 (1), 1-35, 2020
9122020
Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses
R Van Velzen, R Holmer, F Bu, L Rutten, A van Zeijl, W Liu, L Santuari, ...
Proceedings of the National Academy of Sciences 115 (20), E4700-E4709, 2018
2172018
Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline
FT Bakker, D Lei, J Yu, S Mohammadin, Z Wei, S van de Kerke, ...
Biological Journal of the Linnean Society 117 (1), 33-43, 2016
1552016
Phylogenomic synteny network analysis of MADS-box transcription factor genes reveals lineage-specific transpositions, ancient tandem duplications, and deep positional conservation
T Zhao, R Holmer, S de Bruijn, GC Angenent, HA van den Burg, ...
The Plant Cell 29 (6), 1278-1292, 2017
1022017
Host‐ and stage‐dependent secretome of the arbuscular mycorrhizal fungus Rhizophagus irregularis
T Zeng, R Holmer, J Hontelez, B te Lintel‐Hekkert, L Marufu, T de Zeeuw, ...
The Plant Journal 94 (3), 411-425, 2018
912018
Commonalities in symbiotic plant-microbe signalling
R Holmer, L Rutten, W Kohlen, R van Velzen, R Geurts
Advances in botanical research 82, 187-221, 2017
142017
The Effect of Exogenous Nitrate on LCO Signalling, Cytokinin Accumulation, and Nodule Initiation in Medicago truncatula
K Gühl, R Holmer, TT Xiao, D Shen, TAK Wardhani, R Geurts, A van Zeijl, ...
Genes 12 (7), 988, 2021
122021
The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light‐use efficiency
F Garassino, RY Wijfjes, R Boesten, F Reyes Marquez, FFM Becker, ...
The Plant Journal 112 (5), 1298-1315, 2022
6*2022
The BOP‐type co‐transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii
D Shen, R Holmer, O Kulikova, C Mannapperuma, NR Street, Z Yan, ...
The Plant Journal 106 (5), 1366-1386, 2021
42021
GeneNoteBook, a collaborative notebook for comparative genomics
R Holmer, R van Velzen, R Geurts, T Bisseling, D de Ridder, S Smit
Bioinformatics 35 (22), 4779-4781, 2019
32019
Herbarium Genonomics, Skimming and Plastome Sequencing
FT Bakker, D Lei, R Holmer
Tropical Plant Collections: Legacies from the Past? Essential Tools for the …, 2017
22017
Marker gene discovery from single-nucleus RNA-sequencing data
R Damen, H Nijveen, R Holmer
12020
CYP79B2 and CYP79B3 contribute to root branching through production of the auxin precursor indole-3-acetonitrile
E van Zelm, IT Koevoets, AJ Meyer, K van der Velde, T De Zeeuw, ...
bioRxiv, 2023.09. 26.559630, 2023
2023
Comparative and functional genomics of nitrogen-fixing rhizobium symbiosis in plants
R Holmer
PQDT-Global, 2021
2021
Host- and stage-dependent secretome of the arbuscular mycorrhizal fungus Rhizophagus irregularis.
ZT Zeng Tian, R Holmer, J Hontelez, B Te Lintel-Hekkert, L Marufu, ...
2018
Data from: Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses
R van Velzen, R Holmer, F Bu, LJJ Rutten, AL van Zeijl, W Liu, L Santuari, ...
2018
Dual Effect of Ethylene on Root Nodulation of Parasponia andersonii
MS Kalhor, R Holmer, A van Zeijl, T Bisseling, R Geurts
Maryam Seifi Kalhor, 105, 0
Network Assisted Analysis of Medicago truncatula Transcriptional and Metabolic Interactions
R Holmer, S Smit, R Geurts, W Kohlen
Plant and Animal Genome XXVI Conference (January 13-17, 2018), 0
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Articles 1–18