Gennaro Gambardella
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Differential network analysis for the identification of condition-specific pathway activity and regulation
G Gambardella, MN Moretti, R De Cegli, L Cardone, A Peron, ...
Bioinformatics 29 (14), 1776-1785, 2013
Single-cell RNA sequencing analysis: a step-by-step overview
S Slovin, A Carissimo, F Panariello, A Grimaldi, V Bouché, G Gambardella, ...
RNA Bioinformatics, 343-365, 2021
Fibroblast growth factor signalling controls nervous system patterning and pigment cell formation in Ciona intestinalis
C Racioppi, AK Kamal, F Razy-Krajka, G Gambardella, L Zanetti, ...
Nature communications 5 (1), 4830, 2014
A single-cell analysis of breast cancer cell lines to study tumour heterogeneity and drug response
G Gambardella, G Viscido, B Tumaini, A Isacchi, R Bosotti, D di Bernardo
Nature communications 13 (1), 1714, 2022
Patients with genetically heterogeneous synchronous colorectal cancer carry rare damaging germline mutations in immune-related genes
M Cereda, G Gambardella, L Benedetti, F Iannelli, D Patel, G Basso, ...
Nature Communications 7 (1), 12072, 2016
GADD34 is a modulator of autophagy during starvation
G Gambardella, L Staiano, MN Moretti, R De Cegli, L Fagnocchi, ...
Science Advances 6 (39), eabb0205, 2020
TRPV4 and purinergic receptor signalling pathways are separately linked in airway epithelia to CFTR and TMEM16A chloride channels
M Genovese, A Borrelli, A Venturini, D Guidone, E Caci, G Viscido, ...
The Journal of physiology 597 (24), 5859-5878, 2019
The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells
G Gambardella, A Carissimo, A Chen, L Cutillo, TJ Nowakowski, ...
Nature communications 8 (1), 14126, 2017
Reverse engineering a mouse embryonic stem cell-specific transcriptional network reveals a new modulator of neuronal differentiation
R De Cegli, S Iacobacci, G Flore, G Gambardella, L Mao, L Cutillo, ...
Nucleic acids research 41 (2), 711-726, 2013
Cancer of unknown primary stem-like cells model multi-organ metastasis and unveil liability to MEK inhibition
F Verginelli, A Pisacane, G Gambardella, A D’Ambrosio, E Candiello, ...
Nature communications 12 (1), 2498, 2021
O-linked mucin-type glycosylation regulates the transcriptional programme downstream of EGFR
V Tajadura-Ortega, G Gambardella, A Skinner, A Halim, J Van Coillie, ...
Glycobiology 31 (3), 200-210, 2021
A tool for visualization and analysis of single-cell RNA-seq data based on text mining
G Gambardella, D Di Bernardo
Frontiers in genetics 10, 734, 2019
Cancer of unknown primary (CUP): genetic evidence for a novel nosological entity? A case report
S Benvenuti, M Milan, E Geuna, A Pisacane, R Senetta, G Gambardella, ...
EMBO Molecular Medicine 12 (7), e11756, 2020
A reverse-engineering approach to dissect post-translational modulators of transcription factor’s activity from transcriptional data
G Gambardella, I Peluso, S Montefusco, M Bansal, DL Medina, ...
BMC bioinformatics 16 (1), 1-9, 2015
Computational drug repositioning and elucidation of mechanism of action of compounds against sars-cov-2
F Napolitano, G Gambardella, D Carrella, X Gao, D di Bernardo
arXiv preprint arXiv:2004.07697, 2020
MEGA-V: detection of variant gene sets in patient cohorts
G Gambardella, M Cereda, L Benedetti, FD Ciccarelli
Bioinformatics 33 (8), 1248-1249, 2017
Single-cell gene set enrichment analysis and transfer learning for functional annotation of scRNA-seq data
M Franchini, S Pellecchia, G Viscido, G Gambardella
NAR Genomics and Bioinformatics 5 (1), lqad024, 2023
TFEBexplorer: an integrated tool to study genes regulated by the stress-responsive transcription factor EB
R De Cegli, D Carrella, D Siciliano, G Gambardella, G Napolitano, ...
Autophagy Reports 1 (1), 295-305, 2022
Mutated axon guidance gene PLXNB2 sustains growth and invasiveness of stem cells isolated from cancers of unknown primary
S Brundu, V Napolitano, G Franzolin, E Lo Cascio, R Mastrantonio, ...
EMBO Molecular Medicine 15 (3), e16104, 2023
MicroRNA 483‐3p overexpression unleashes invasive growth of metastatic colorectal cancer via NDRG1 downregulation and ensuing activation of the ERBB3/AKT …
E Candiello, G Reato, F Verginelli, G Gambardella, A D′ Ambrosio, ...
Molecular Oncology, 2023
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