Patrick M Shih
Patrick M Shih
UC Davis, Joint BioEnergy Institute, Lawrence Berkeley National Lab
Verified email at ucdavis.edu - Homepage
Title
Cited by
Cited by
Year
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
PM Shih, D Wu, A Latifi, SD Axen, DP Fewer, E Talla, A Calteau, F Cai, ...
Proceedings of the National Academy of Sciences 110 (3), 1053-1058, 2013
6762013
Direct Identification of the Meloidogyne incognita Secretome Reveals Proteins with Host Cell Reprogramming Potential
S Bellafiore, Z Shen, MN Rosso, P Abad, P Shih, SP Briggs
PLoS pathogens 4 (10), e1000192, 2008
2522008
Standards for plant synthetic biology: a common syntax for exchange of DNA parts
NJ Patron, D Orzaez, S Marillonnet, H Warzecha, C Matthewman, ...
New Phytologist 208 (1), 13-19, 2015
1862015
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
L Rajeev, UN Da Rocha, N Klitgord, EG Luning, J Fortney, SD Axen, ...
The ISME journal 7 (11), 2178-2191, 2013
1652013
Crown group Oxyphotobacteria postdate the rise of oxygen
PM Shih, J Hemp, LM Ward, NJ Matzke, WW Fischer
Geobiology 15 (1), 19-29, 2017
1202017
Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins
PM Shih, NJ Matzke
Proceedings of the National Academy of Sciences 110 (30), 12355-12360, 2013
1082013
Precise age of Bangiomorpha pubescens dates the origin of eukaryotic photosynthesis
TM Gibson, PM Shih, VM Cumming, WW Fischer, PW Crockford, ...
Geology 46 (2), 135-138, 2018
972018
Introduction of a synthetic CO2-fixing photorespiratory bypass into a cyanobacterium
PM Shih, J Zarzycki, KK Niyogi, CA Kerfeld
Journal of Biological Chemistry 289 (14), 9493-9500, 2014
862014
Biochemical characterization of predicted Precambrian RuBisCO
PM Shih, A Occhialini, JC Cameron, PJ Andralojc, MAJ Parry, CA Kerfeld
Nature Communications 7 (1), 1-11, 2016
722016
Evolution of phototrophy in the Chloroflexi phylum driven by horizontal gene transfer
LM Ward, J Hemp, PM Shih, SE McGlynn, WW Fischer
Frontiers in microbiology 9, 260, 2018
662018
Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi
PM Shih, LM Ward, WW Fischer
Proceedings of the National Academy of Sciences 114 (40), 10749-10754, 2017
492017
Bacterial diversification through geological time
S Louca, PM Shih, MW Pennell, WW Fischer, LW Parfrey, M Doebeli
Nature ecology & evolution 2 (9), 1458-1467, 2018
482018
A robust gene-stacking method utilizing yeast assembly for plant synthetic biology
PM Shih, K Vuu, N Mansoori, L Ayad, KB Louie, BP Bowen, TR Northen, ...
Nature communications 7 (1), 1-8, 2016
442016
Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops
PM Shih, Y Liang, D Loque
The Plant Journal 87 (1), 103-117, 2016
382016
Excited-state properties of the 16 kDa red carotenoid protein from Arthrospira maxima
P Chábera, M Durchan, PM Shih, CA Kerfeld, T Polívka
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1807 (1), 30-35, 2011
382011
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
PBM Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, I Sharon, ...
Nature communications 10 (1), 1-15, 2019
292019
The evolution and productivity of carbon fixation pathways in response to changes in oxygen concentration over geological time
LM Ward, PM Shih
Free Radical Biology and Medicine 140, 188-199, 2019
222019
MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled genomes
LM Ward, PM Shih, WW Fischer
Bioinformatics 34 (24), 4284-4286, 2018
222018
Photosynthesis and early Earth
PM Shih
Current Biology 25 (19), R855-R859, 2015
222015
Cyanobacterial evolution: fresh insight into ancient questions
PM Shih
Current Biology 25 (5), R192-R193, 2015
222015
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Articles 1–20