| Tempo and mode of genome evolution in the budding yeast subphylum XX Shen, DA Opulente, J Kominek, X Zhou, JL Steenwyk, KV Buh, ... Cell 175 (6), 1533-1545. e20, 2018 | 436 | 2018 |
| ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference JL Steenwyk, TJ Buida III, Y Li, XX Shen, A Rokas PLoS biology 18 (12), e3001007, 2020 | 240 | 2020 |
| A genome-scale phylogeny of the kingdom Fungi Y Li, JL Steenwyk, Y Chang, Y Wang, TY James, JE Stajich, JW Spatafora, ... Current Biology 31 (8), 1653-1665. e5, 2021 | 194 | 2021 |
| Gene essentiality analyzed by in vivo transposon mutagenesis and machine learning in a stable haploid isolate of Candida albicans ES Segal, V Gritsenko, A Levitan, B Yadav, N Dror, JL Steenwyk, ... MBio 9 (5), e02048-18, 2018 | 114 | 2018 |
| Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota XX Shen, JL Steenwyk, AL LaBella, DA Opulente, X Zhou, J Kominek, Y Li, ... Science Advances 6 (45), eabd0079, 2020 | 109 | 2020 |
| Biosynthetic gene clusters and the evolution of fungal chemodiversity A Rokas, ME Mead, JL Steenwyk, HA Raja, NH Oberlies Natural product reports 37 (7), 868-878, 2020 | 108 | 2020 |
| A robust phylogenomic time tree for biotechnologically and medically important fungi in the genera Aspergillus and Penicillium JL Steenwyk, XX Shen, AL Lind, GH Goldman, A Rokas MBio 10 (4), e00925-19, 2019 | 104 | 2019 |
| Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts JL Steenwyk, DA Opulente, J Kominek, XX Shen, X Zhou, AL Labella, ... PLoS Biology 17 (5), e3000255, 2019 | 101 | 2019 |
| Variation and selection on codon usage bias across an entire subphylum AL Labella, DA Opulente, JL Steenwyk, CT Hittinger, A Rokas PLoS Genetics 15 (7), e1008304, 2019 | 82 | 2019 |
| PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data JL Steenwyk, TJ Buida III, AL Labella, Y Li, XX Shen, A Rokas Bioinformatics 37 (16), 2325-2331, 2021 | 77 | 2021 |
| Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae Wine Strains J Steenwyk, A Rokas G3: Genes, Genomes, Genetics 7 (5), 1475-1485, 2017 | 58 | 2017 |
| Rapid phenotypic and metabolomic domestication of wild Penicillium molds on cheese I Bodinaku, J Shaffer, A Connors, J Steenwyk, E Kastman, A Rokas, ... MBio 10 (5), e02445-19, 2019 | 52 | 2019 |
| Nutritional Heterogeneity Among Aspergillus fumigatus Strains Has Consequences for Virulence in a Strain- and Host-Dependent Manner LNA Ries, JL Steenwyk, PA de Castro, PBA de Lima, F Almeida, ... Frontiers in microbiology 10, 854, 2019 | 51 | 2019 |
| Variation Among Biosynthetic Gene Clusters, Secondary Metabolite Profiles, and Cards of Virulence Across Aspergillus Species JL Steenwyk, ME Mead, SL Knowles, HA Raja, CD Roberts, O Bader, ... Genetics 216 (2), 481-497, 2020 | 50 | 2020 |
| Copy number variation in fungi and its implications for wine yeast genetic diversity and adaptation JL Steenwyk, A Rokas Frontiers in microbiology 9, 340048, 2018 | 49 | 2018 |
| Characterizing the Pathogenic, Genomic, and Chemical Traits of Aspergillus fischeri, a Close Relative of the Major Human Fungal Pathogen Aspergillus fumigatus ME Mead, SL Knowles, HA Raja, SR Beattie, CH Kowalski, JL Steenwyk, ... Msphere 4 (1), e00018-19, 2019 | 46 | 2019 |
| Mapping the Fungal Battlefield: Using in situ Chemistry and Deletion Mutants to Monitor Interspecific Chemical Interactions Between Fungi SL Knowles, HA Raja, AJ Wright, AML Lee, LK Caesar, NB Cech, ... Frontiers in Microbiology 10, 285, 2019 | 44 | 2019 |
| Genomic and phenotypic heterogeneity of clinical isolates of the human pathogens Aspergillus fumigatus, Aspergillus lentulus, and Aspergillus fumigatiaffinis RAC Dos Santos, JL Steenwyk, O Rivero-Menendez, ME Mead, LP Silva, ... Frontiers in genetics 11, 539134, 2020 | 42 | 2020 |
| Pathogenic allodiploid hybrids of Aspergillus fungi JL Steenwyk, AL Lind, LNA Ries, TF Dos Reis, LP Silva, F Almeida, ... Current Biology 30 (13), 2495-2507. e7, 2020 | 41 | 2020 |
| Evolving moldy murderers: Aspergillus section Fumigati as a model for studying the repeated evolution of fungal pathogenicity A Rokas, ME Mead, JL Steenwyk, NH Oberlies, GH Goldman PLoS pathogens 16 (2), e1008315, 2020 | 41 | 2020 |
Antonis RokasCornelius Vanderbilt Chair in Biological Sciences, Vanderbilt UniversityVerified email at vanderbilt.edu
