| Ancestral reconstruction JB Joy, RH Liang, RM McCloskey, T Nguyen, AFY Poon PLoS computational biology 12 (7), e1004763, 2016 | 184 | 2016 |
| Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes JK Mann, H Byakwaga, XT Kuang, AQ Le, CJ Brumme, P Mwimanzi, ... Retrovirology 10, 1-16, 2013 | 86 | 2013 |
| The spread of hepatitis C virus genotype 1a in North America: a retrospective phylogenetic study JB Joy, RM McCloskey, T Nguyen, RH Liang, Y Khudyakov, A Olmstead, ... The Lancet Infectious Diseases 16 (6), 698-702, 2016 | 56 | 2016 |
| Global origin and transmission of hepatitis C virus NS3 Q80K polymorphism RM McCloskey, RH Liang, JB Joy, M Krajden, JSG Montaner, ... Journal of Infectious Diseases, jiu613, 2014 | 55* | 2014 |
| Mapping the shapes of phylogenetic trees from human and zoonotic RNA viruses AFY Poon, LW Walker, H Murray, RM McCloskey, PR Harrigan, RH Liang PLoS one 8 (11), e78122, 2013 | 54 | 2013 |
| Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing RH Liang, T Mo, W Dong, GQ Lee, LC Swenson, RM McCloskey, ... Nucleic Acids Research 42 (12), e98-e98, 2014 | 31 | 2014 |
| A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation RM McCloskey, AFY Poon PLoS computational biology 13 (11), e1005868, 2017 | 30 | 2017 |
| Differential evolution of a CXCR4-using HIV-1 strain in CCR5wt/wt and CCR5∆ 32/∆ 32 hosts revealed by longitudinal deep sequencing and phylogenetic reconstruction AQ Le, J Taylor, W Dong, R McCloskey, C Woods, R Danroth, K Hayashi, ... Scientific reports 5 (1), 17607, 2015 | 20 | 2015 |
| Reconstructing contact network parameters from viral phylogenies RM McCloskey, RH Liang, AFY Poon Virus evolution 2 (2), vew029, 2016 | 16 | 2016 |
| An evaluation of phylogenetic methods for reconstructing transmitted HIV variants using longitudinal clonal HIV sequence data RM McCloskey, RH Liang, PR Harrigan, ZL Brumme, AFY Poon Journal of virology 88 (11), 6181-6194, 2014 | 15 | 2014 |
| Origin and evolution of human immunodeficiency viruses JB Joy, RH Liang, T Nguyen, RM McCloskey, AFY Poon Global Virology I-Identifying and Investigating Viral Diseases, 587-611, 2015 | 7 | 2015 |
| Phylogenetically estimated HIV diversification rates reveal prevention of HIV‐1 by antiretroviral therapy J Joy, R Liang, R McCloskey, T Nguyen, C Brumme, G Colley, R Hogg, ... African Journal of Reproduction and Gynaecological Endoscopy 18, 2015 | 3 | 2015 |
| Impact of experimental conditions on the utility of" primer ID" tagging for next-generation HIV sequencing RH Liang, T Mo, W Dong, GQ Lee, LC Swenson, RM McCloskey, ... Conference on Retroviruses and Opportunistic Infections Poster 0-128, 2013 | 3 | 2013 |
| Phylodynamic insights into HIV epidemic dynamics within Canada J Joy, R Liang, T Nguyen, R McCloskey, B Brenner, T Lynch, J Gill, ... JOURNAL OF THE INTERNATIONAL AIDS SOCIETY 20, 100-101, 2017 | | 2017 |
| Phylogenetic estimation of contact network parameters with approximate Bayesian computation RM McCloskey University of British Columbia, 2016 | | 2016 |
| Population‐level spread of immune‐driven mutations in HIV‐1 polymerase during the North American epidemic NN Kinloch, DR Macmillan, AQ Le, LA Cotton, R McCloskey, ... African Journal of Reproduction and Gynaecological Endoscopy 18, 2015 | | 2015 |
| Within-host evolution of X4 HIV-1 in a rare transmission pair revealed by phylogenetic reconstruction of deep-sequence data A Le, J Taylor, W Dong, R McCloskey, C Woods, K Hayashi, MJ Milloy, ... JOURNAL OF THE INTERNATIONAL AIDS SOCIETY 18, 2015 | | 2015 |
| 8th IAS Conference on HIV Pathogenesis, Treatment & Prevention 19â 22 July 2015, Vancouver, Canada KM Pate, C Pohlmeyer, V Walker‐Sperling, J Foote, K Najarro, C Cryer, ... International AIDS Society, 2015 | | 2015 |
Art FY PoonWestern UniversityVerified email at uwo.ca
