| Salmon provides fast and bias-aware quantification of transcript expression R Patro, G Duggal, MI Love, RA Irizarry, C Kingsford Nature methods 14 (4), 417-419, 2017 | 6116 | 2017 |
| A fast, lock-free approach for efficient parallel counting of occurrences of k-mers G Marçais, C Kingsford Bioinformatics 27 (6), 764-770, 2011 | 2838 | 2011 |
| Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms R Patro, SM Mount, C Kingsford Nature biotechnology 32 (5), 462-464, 2014 | 716 | 2014 |
| Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake CL Kingsford, K Ayanbule, SL Salzberg Genome biology 8, 1-12, 2007 | 556 | 2007 |
| What are decision trees? C Kingsford, SL Salzberg Nature biotechnology 26 (9), 1011-1013, 2008 | 534 | 2008 |
| The power of protein interaction networks for associating genes with diseases S Navlakha, C Kingsford Bioinformatics 26 (8), 1057-1063, 2010 | 402 | 2010 |
| Genome analysis linking recent European and African influenza (H5N1) viruses SL Salzberg, C Kingsford, G Cattoli, DJ Spiro, DA Janies, MM Aly, ... Emerging infectious diseases 13 (5), 713, 2007 | 251 | 2007 |
| Solving and analyzing side-chain positioning problems using linear and integer programming CL Kingsford, B Chazelle, M Singh Bioinformatics 21 (7), 1028-1039, 2005 | 241 | 2005 |
| Global network alignment using multiscale spectral signatures R Patro, C Kingsford Bioinformatics 28 (23), 3105-3114, 2012 | 234 | 2012 |
| Identification of alternative topological domains in chromatin D Filippova, R Patro, G Duggal, C Kingsford Algorithms for Molecular Biology 9, 1-11, 2014 | 225 | 2014 |
| Assembly complexity of prokaryotic genomes using short reads C Kingsford, MC Schatz, M Pop BMC bioinformatics 11, 1-11, 2010 | 169 | 2010 |
| Accurate assembly of transcripts through phase-preserving graph decomposition M Shao, C Kingsford Nature biotechnology 35 (12), 1167-1169, 2017 | 160 | 2017 |
| Salmon: accurate, versatile and ultrafast quantification from RNA-seq data using lightweight-alignment R Patro, G Duggal, C Kingsford Cold Spring Harbor, 2015 | 151 | 2015 |
| Fast search of thousands of short-read sequencing experiments B Solomon, C Kingsford Nature biotechnology 34 (3), 300-302, 2016 | 146 | 2016 |
| Alignment and clustering of phylogenetic markers-implications for microbial diversity studies JR White, S Navlakha, N Nagarajan, MR Ghodsi, C Kingsford, M Pop BMC bioinformatics 11, 1-10, 2010 | 113 | 2010 |
| A semidefinite programming approach to side chain positioning with new rounding strategies B Chazelle, C Kingsford, M Singh INFORMS Journal on Computing 16 (4), 380-392, 2004 | 112 | 2004 |
| Alignment and mapping methodology influence transcript abundance estimation A Srivastava, L Malik, H Sarkar, M Zakeri, F Almodaresi, C Soneson, ... Genome biology 21 (1), 1-29, 2020 | 99 | 2020 |
| Revealing biological modules via graph summarization S Navlakha, MC Schatz, C Kingsford Journal of Computational Biology 16 (2), 253-264, 2009 | 89 | 2009 |
| Experimental construction of very large scale DNA databases with associative search capability JH Reif, TH LaBean, M Pirrung, VS Rana, B Guo, C Kingsford, ... DNA Computing: 7th International Workshop on DNA-Based Computers, DNA7 Tampa …, 2002 | 89 | 2002 |
| Network archaeology: uncovering ancient networks from present-day interactions S Navlakha, C Kingsford PLoS computational biology 7 (4), e1001119, 2011 | 87 | 2011 |
Geet DuggalPh.D. Student, School of Computer Science, Carnegie Mellon UniversityVerified email at cs.cmu.edu
