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Curtis Rueden
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Year
Fiji: an open-source platform for biological-image analysis
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nature methods 9 (7), 676-682, 2012
425462012
ImageJ2: ImageJ for the next generation of scientific image data
CT Rueden, J Schindelin, MC Hiner, BE DeZonia, AE Walter, ET Arena, ...
BMC bioinformatics 18, 1-26, 2017
45802017
The ImageJ ecosystem: An open platform for biomedical image analysis
J Schindelin, CT Rueden, MC Hiner, KW Eliceiri
Molecular reproduction and development 82 (7-8), 518-529, 2015
23322015
Collagen density promotes mammary tumor initiation and progression
PP Provenzano, DR Inman, KW Eliceiri, JG Knittel, L Yan, CT Rueden, ...
BMC medicine 6 (1), 1-15, 2008
14242008
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification
I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ...
Bioinformatics 33 (15), 2424-2426, 2017
14122017
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software
L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ...
Bioinformatics 27 (8), 1179-1180, 2011
10512011
Metadata matters: access to image data in the real world
M Linkert, CT Rueden, C Allan, JM Burel, W Moore, A Patterson, ...
Journal of Cell Biology 189 (5), 777-782, 2010
8462010
Tools for visualizing multidimensional images from living specimens
KW Eliceiri, C Rueden
Photochemistry and photobiology 81 (5), 1116-1122, 2005
1682005
Visualization approaches for multidimensional biological image data
CT Rueden, KW Eliceiri
BioTechniques 43 (S1), S31-S36, 2007
1542007
Assessing microscope image focus quality with deep learning
SJ Yang, M Berndl, D Michael Ando, M Barch, A Narayanaswamy, ...
BMC bioinformatics 19, 1-9, 2018
1342018
Quantitating the cell: turning images into numbers with ImageJ
ET Arena, CT Rueden, MC Hiner, S Wang, M Yuan, KW Eliceiri
Wiley Interdisciplinary Reviews: Developmental Biology 6 (2), e260, 2017
1012017
Nonlinear optical imaging and spectral-lifetime computational analysis of endogenous and exogenous fluorophores in breast cancer
PP Provenzano, CT Rueden, SM Trier, L Yan, SM Ponik, DR Inman, ...
Journal of Biomedical Optics 13 (3), 031220-031220-11, 2008
642008
Nat Methods
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nat Methods 9, 2012
612012
The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis
AB Schroeder, ETA Dobson, CT Rueden, P Tomancak, F Jug, KW Eliceiri
Protein Science 30 (1), 234-249, 2021
522021
VisBio: a computational tool for visualization of multidimensional biological image data
C Rueden, KW Eliceiri, JG White
Traffic 5 (6), 411-417, 2004
502004
Applications of combined spectral lifetime microscopy for biology
L Yan, CT Rueden, JG White, KW Eliceiri
Biotechniques 41 (3), 249-257, 2006
352006
SCIFIO: an extensible framework to support scientific image formats
MC Hiner, CT Rueden, KW Eliceiri
BMC bioinformatics 17 (1), 1-5, 2016
272016
Multiphoton flow cytometry to assess intrinsic and extrinsic fluorescence in cellular aggregates: applications to stem cells
DG Buschke, JM Squirrell, H Ansari, MA Smith, CT Rueden, JC Williams, ...
Microscopy and Microanalysis 17 (4), 540-554, 2011
242011
ImageJ-MATLAB: a bidirectional framework for scientific image analysis interoperability
MC Hiner, CT Rueden, KW Eliceiri
Bioinformatics 33 (4), 629-630, 2017
222017
Integration of the ImageJ ecosystem in Knime analytics platform
C Dietz, CT Rueden, S Helfrich, ETA Dobson, M Horn, J Eglinger, ...
Frontiers in computer science 2, 8, 2020
212020
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Articles 1–20