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M. Desmond Ramirez
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The last common ancestor of most bilaterian animals possessed at least nine opsins
MD Ramirez, AN Pairett, MS Pankey, JM Serb, DI Speiser, AJ Swafford, ...
Genome biology and evolution 8 (12), 3640-3652, 2016
1372016
Eye-independent, light-activated chromatophore expansion (LACE) and expression of phototransduction genes in the skin of Octopus bimaculoides
MD Ramirez, TH Oakley
Journal of Experimental Biology 218 (10), 1513-1520, 2015
1272015
Understanding the dermal light sense in the context of integrative photoreceptor cell biology.
MD Ramirez, DI Speiser, MS Pankey, TH Oakley
Visual neuroscience, 1, 2011
742011
Prolific origination of eyes in Cnidaria with co-option of non-visual opsins
N Picciani, JR Kerlin, N Sierra, AJM Swafford, MD Ramirez, NG Roberts, ...
Current Biology 28 (15), 2413-2419. e4, 2018
482018
Accelerated clearing and molecular labeling of biological tissues using magnetohydrodynamic force
J Dwyer, MD Ramirez, PS Katz, RO Karlstrom, J Bergan
Scientific reports 11 (1), 16462, 2021
52021
Movie
MD Ramirez, TH Oakley
Journal of Experimental Biology 218, 1513-1520, 2015
52015
The genome of the soybean gall midge (Resseliella maxima)
G Melotto, MW Jones, K Bosley, N Flack, LE Frank, E Jacobson, EJ Kipp, ...
G3: Genes, Genomes, Genetics 13 (4), jkad046, 2023
22023
A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes
JA Goodheart, RA Rio, NF Taraporevala, RA Fiorenza, SR Barnes, ...
bioRxiv, 2023
12023
Mapping neuronal gene expression reveals aspects of ganglionic organization in a gastropod mollusc
MD Ramirez, T Bui, PS Katz
bioRxiv, 2023.06. 22.546160, 2023
12023
Opsins without eyes-precursors or derivatives?
TH Oakley, MD Ramirez
INTEGRATIVE AND COMPARATIVE BIOLOGY 56, E164-E164, 2016
12016
A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes
JA Goodheart, RA Rio, NF Taraporevala, RA Fiorenza, SR Barnes, ...
BMC biology 22 (1), 9, 2024
2024
Implementation of California COVIDNet–a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance
DA Wadford, N Baumrind, EF Baylis, JM Bell, EL Bouchard, M Crumpler, ...
Frontiers in Public Health 11, 1249614, 2023
2023
Single neuron transcriptomics and in-situ hybridization chain reaction reveal molecular fingerprints for neurons in the brain of the nudibranch Berghia stephanieae
MD Ramirez, TN Bui, PS Katz
INTEGRATIVE AND COMPARATIVE BIOLOGY 62, S257-S258, 2023
2023
Egg-laying hormone expression in identified neurons across developmental stages and reproductive states of the nudibranch Berghia stephanieae
CC Tait, MD Ramirez, PS Katz
bioRxiv, 2023.12. 21.572887, 2023
2023
Using hybridization chain reaction for reliable, large-scale mapping of neurons in the brain of the nudibranch, Berghia stephanieae
MD Ramirez, C Tait, PS Katz
INTEGRATIVE AND COMPARATIVE BIOLOGY 61, E1231-E1232, 2021
2021
Nudibranch opsins: identification, localization and potential roles in extraocular photoreception and circadian rhythms
JM Newcomb, MA Gingras, SN Nelson, CB McGhee, JH Easter, ...
INTEGRATIVE AND COMPARATIVE BIOLOGY 60, E173-E173, 2020
2020
Molecular and behavioral characterization of two reproductive hormones in the nudibranch Berghia stephanieae
C Tait, MD Ramirez, M Olson, PS Katz
INTEGRATIVE AND COMPARATIVE BIOLOGY 60, E425-E425, 2020
2020
Accelerated clearing and molecular labeling of large tissue samples using magnetohydrodynamic force
J Dwyer, MD Ramirez, PS Katz, RO Karlstrom, J Bergan
bioRxiv, 819292, 2019
2019
Phylogenetic position of Alternochelata lizardensis Kornicker, 1982 within Rutidermatidae (Ostracoda: Myodocopida), with an investigation into its green coloration
JH Peniston, EA Ellis, CKC Churchill, MD Ramirez, TH Oakley
The Journal of Crustacean Biology 39 (5), 559-566, 2019
2019
Behavioral Characterization of Berghia stephanieae: A Novel Laboratory Species for Neuroethological Research
PD Quinlan, MD Ramirez, B Drescher, PS Katz
INTEGRATIVE AND COMPARATIVE BIOLOGY 59, E391-E391, 2019
2019
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Articles 1–20