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Brett G. Olivier
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Year
Web-based kinetic modelling using JWS Online
BG Olivier, JL Snoep
Bioinformatics 20 (13), 2143-2144, 2004
3822004
Modelling cellular systems with PySCeS
BG Olivier, JM Rohwer, JHS Hofmeyr
Bioinformatics 21 (4), 560-561, 2005
2242005
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
1872020
Community flux balance analysis for microbial consortia at balanced growth
RA Khandelwal, BG Olivier, WFM Röling, B Teusink, FJ Bruggeman
PloS one 8 (5), e64567, 2013
1792013
Towards building the silicon cell: a modular approach
JL Snoep, F Bruggeman, BG Olivier, HV Westerhoff
Biosystems 83 (2-3), 207-216, 2006
1662006
A systematic assessment of current genome-scale metabolic reconstruction tools
SN Mendoza, BG Olivier, D Molenaar, B Teusink
Genome biology 20 (1), 1-20, 2019
1192019
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15 (1), 1-9, 2014
1182014
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
1092020
FAME, the flux analysis and modeling environment
J Boele, BG Olivier, B Teusink
BMC systems biology 6 (1), 1-5, 2012
1042012
Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks
SM Kelk, BG Olivier, L Stougie, FJ Bruggeman
Scientific reports 2 (1), 1-7, 2012
942012
StochPy: a comprehensive, user-friendly tool for simulating stochastic biological processes
TR Maarleveld, BG Olivier, FJ Bruggeman
PloS one 8 (11), e79345, 2013
852013
Constraint-based stoichiometric modelling from single organisms to microbial communities
W Gottstein, BG Olivier, FJ Bruggeman, B Teusink
Journal of the Royal Society Interface 13 (124), 20160627, 2016
792016
Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure
M Hanemaaijer, WFM Röling, BG Olivier, RA Khandelwal, B Teusink, ...
Frontiers in microbiology 6, 213, 2015
762015
Basic concepts and principles of stoichiometric modeling of metabolic networks
TR Maarleveld, RA Khandelwal, BG Olivier, B Teusink, FJ Bruggeman
Biotechnology journal 8 (9), 997-1008, 2013
692013
The Systems Biology Markup Language (SBML): language specification for level 3 version 2 core
M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ...
Journal of integrative bioinformatics 15 (1), 2018
622018
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
BioRxiv, 350991, 2018
532018
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2
M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ...
Journal of integrative bioinformatics 16 (2), 2019
472019
SBML level 3 package: flux balance constraints version 2
BG Olivier, FT Bergmann
Journal of integrative bioinformatics 15 (1), 2018
462018
Harmonizing semantic annotations for computational models in biology
ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ...
Briefings in bioinformatics 20 (2), 540-550, 2019
442019
Model-based quantification of metabolic interactions from dynamic microbial-community data
M Hanemaaijer, BG Olivier, WFM Röling, FJ Bruggeman, B Teusink
PloS one 12 (3), e0173183, 2017
422017
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Articles 1–20