Mariliis Tark-Dame
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Chromatin folding–from biology to polymer models and back
M Tark-Dame, R van Driel, DW Heermann
Journal of cell science 124 (6), 839-845, 2011
dCas9: a versatile tool for epigenome editing
DJW Brocken, M Tark-Dame, RT Dame
Current issues in molecular biology 26 (1), 15-32, 2018
Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling
M Tark-Dame, H Jerabek, EMM Manders, DW Heermann, R van Driel
PLoS computational biology 10 (10), e1003877, 2014
Bacterial chromatin: converging views at different scales
RT Dame, M Tark-Dame
Current opinion in cell biology 40, 60-65, 2016
Involvement of Error-Prone DNA Polymerase IV in Stationary-Phase Mutagenesis in Pseudomonas putida
R Tegova, A Tover, K Tarassova, M Tark, M Kivisaar
Journal of bacteriology 186 (9), 2735-2744, 2004
3D genome organization: a role for phase separation and loop extrusion?
M Stam, M Tark-Dame, P Fransz
Current opinion in plant biology 48, 36-46, 2019
A DNA Polymerase V Homologue Encoded by TOL Plasmid pWW0 Confers Evolutionary Fitness on Pseudomonas putida under Conditions of Environmental Stress
M Tark, A Tover, K Tarassova, R Tegova, G Kivi, R Horak, M Kivisaar
Journal of bacteriology 187 (15), 5203-5213, 2005
Study of involvement of ImuB and DnaE2 in stationary-phase mutagenesis in Pseudomonas putida
L Koorits, R Tegova, M Tark, K Tarassova, A Tover, M Kivisaar
DNA repair 6 (6), 863-868, 2007
Dual role of NER in mutagenesis in Pseudomonas putida
M Tark, A Tover, L Koorits, R Tegova, M Kivisaar
DNA repair 7 (1), 20-30, 2008
Oxidative DNA Damage Defense Systems in Avoidance of Stationary-Phase Mutagenesis in Pseudomonas putida
S Saumaa, A Tover, M Tark, R Tegova, M Kivisaar
Journal of bacteriology 189 (15), 5504-5514, 2007
Mutagenic potential of DNA damage repair and tolerance mechanisms under starvation stress
M Tark
Involvement of DNA mismatch repair in stationary-phase mutagenesis during prolonged starvation of Pseudomonas putida
S Saumaa, K Tarassova, M Tark, A Tover, R Tegova, M Kivisaar
DNA repair 5 (4), 505-514, 2006
The visualization of large organized chromatin domains enriched in the H3K9me2 mark within a single chromosome in a single cell
X Chen, S Yammine, C Shi, M Tark-Dame, A Göndör, R Ohlsson
Epigenetics 9 (11), 1439-1445, 2014
Elevated Mutation Frequency in Surviving Populations of Carbon-Starved rpoS-Deficient Pseudomonas putida Is Caused by Reduced Expression of Superoxide …
K Tarassova, R Tegova, A Tover, R Teras, M Tark, S Saumaa, M Kivisaar
Journal of bacteriology 191 (11), 3604-3614, 2009
Homologous recombination is facilitated in starving populations of Pseudomonas putida by phenol stress and affected by chromosomal location of the recombination target
K Tavita, K Mikkel, M Tark-Dame, H Jerabek, R Teras, J Sidorenko, ...
Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 737 (1 …, 2012
The organization of bacterial genomes: towards understanding the interplay between structure and function
DJW Brocken, M Tark-Dame, RT Dame
Current Opinion in Systems Biology 8, 137-143, 2018
A physical approach to segregation and folding of the Caulobacter crescentus genome
RT Dame, M Tark‐Dame, H Schiessel
Molecular microbiology 82 (6), 1311-1315, 2011
Super-resolution re-scan second harmonic generation microscopy
SG Stanciu, R Hristu, GA Stanciu, DE Tranca, L Eftimie, A Dumitru, ...
Proceedings of the National Academy of Sciences 119 (47), e2214662119, 2022
Involvement of specialized DNA polymerases Pol II, Pol IV and DnaE2 in DNA replication in the absence of Pol I in Pseudomonas putida
J Sidorenko, T Jatsenko, S Saumaa, R Teras, M Tark-Dame, R Hõrak, ...
Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 714 (1 …, 2011
Generating transgenic plants with single-copy insertions using BIBAC-GW binary vector
M Tark-Dame, B Weber, M de Sain, DT Anggoro, R Bader, A Walmsley, ...
JoVE (Journal of Visualized Experiments), e57295, 2018
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