Alexandros Stamatakis

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Citations	62135	42752
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Simon A BergerHeidelberg Institute for Theoretical Studies (HITS gGmbH)Verified email at h-its.org
Thomas LudwigProfessor Computer ScienceVerified email at org.dkrz.de
Kassian KobertUniversite de LyonVerified email at univ-lyon1.fr
Andre J. AbererVerified email at aberer.io
Alexey M. KozlovHeidelberg Institute for Theoretical StudiesVerified email at h-its.org
Nikolaos AlachiotisUniversity of TwenteVerified email at utwente.nl
Pavlos PavlidisFoundation of Research and Technology - Hellas (ICS)Verified email at ics.forth.gr
Jiajie ZhangGSKVerified email at jiajie.pub
Fernando Izquierdo-CarrascoAmazon Web ServicesVerified email at amazon.com
Lucas CzechCarnegie Institution for ScienceVerified email at carnegiescience.edu
Diego DarribaUniversity of A Coruña, CITIC, Computer Architecture GroupVerified email at udc.es
Olaf R.P. Bininda-EmondsProfessor of Molecular Systematics, University of OldenburgVerified email at uni-oldenburg.de
Nicholas D. PattengaleVerified email at cs.unm.edu
Paschalia KapliPostdoc, Genetics, Evolution and Environment, University College LondonVerified email at ucl.ac.uk
Stephen A. SmithUniversity of MichiganVerified email at umich.edu
Bernard M.E. MoretProfessor emeritus, Computer & Communication Sciences, EPFL; ISCB FellowVerified email at epfl.ch
Karen MeusemannUniversity of Freiburg, Germany, Institute for Biology I, Evolutionary Biology & EcologyVerified email at karen-meusemann.de
Pierre BarberaHeidelberg Institute of Theoretical StudiesVerified email at h-its.org
Denis KrompassSiemens AGVerified email at siemens.com
Markus GökerDSMZVerified email at dsmz.de

Alexandros Stamatakis

Heidelberg Institute for Theoretical Studies and Karlsruhe Institute of Technology

Verified email at h-its.org - Homepage

Algorithms Parallel Computing Bioinformatics Phylogenetics Evolutionary Biology


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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies A Stamatakis Bioinformatics 30 (9), 1312-1313, 2014	15532	2014
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models A Stamatakis Bioinformatics 22 (21), 2688-2690, 2006	14435	2006
A rapid bootstrap algorithm for the RAxML web servers A Stamatakis, P Hoover, J Rougemont Systematic biology 57 (5), 758-771, 2008	6478	2008
ARB: a software environment for sequence data W Ludwig, O Strunk, R Westram, L Richter, H Meier, Yadhukumar, ... Nucleic acids research 32 (4), 1363-1371, 2004	6126	2004
PEAR: a fast and accurate Illumina Paired-End reAd mergeR J Zhang, K Kobert, T Flouri, A Stamatakis Bioinformatics 30 (5), 614-620, 2014	2267	2014
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees A Stamatakis, T Ludwig, H Meier Bioinformatics 21 (4), 456-463, 2005	1500	2005
Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014	1495	2014
Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014	1263	2014
A general species delimitation method with applications to phylogenetic placements J Zhang, P Kapli, P Pavlidis, A Stamatakis Bioinformatics 29 (22), 2869-2876, 2013	1219	2013
Assessing the root of bilaterian animals with scalable phylogenomic methods A Hejnol, M Obst, A Stamatakis, M Ott, GW Rouse, GD Edgecombe, ... Proceedings of the Royal Society B: Biological Sciences 276 (1677), 4261-4270, 2009	725	2009
How many bootstrap replicates are necessary? ND Pattengale, M Alipour, ORP Bininda-Emonds, BME Moret, ... Journal of Computational Biology 17 (3), 337-354, 2010	523	2010
Frontiers: The iPlant Collaborative: Cyberinfrastructure for Plant Biology SA Goff, M Vaughn, S McKay, E Lyons, AE Stapleton, D Gessler, ... Frontiers in Plant Genetics And Genomics 2, 2011	433*	2011
Selecting optimal partitioning schemes for phylogenomic datasets R Lanfear, B Calcott, D Kainer, C Mayer, A Stamatakis BMC Evolutionary Biology 14 (1), 82, 2014	426	2014
Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood SA Berger, D Krompass, A Stamatakis Systematic biology 60 (3), 291, 2011	383	2011
Phylogenetic models of rate heterogeneity: a high performance computing perspective A Stamatakis Proceedings 20th IEEE International Parallel & Distributed Processing …, 2006	367	2006
How many bootstrap replicates are necessary? ND Pattengale, M Alipour, ORP Bininda-Emonds, BME Moret, ... Annual International Conference on Research in Computational Molecular …, 2009	334	2009
Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013	330	2013
SATé-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees K Liu, TJ Warnow, MT Holder, SM Nelesen, J Yu, AP Stamatakis, ... Systematic Biology 61 (1), 90-106, 2012	325	2012
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis Bioinformatics 35 (21), 4453-4455, 2019	281	2019
Pruning rogue taxa improves phylogenetic accuracy: an efficient algorithm and webservice AJ Aberer, D Krompass, A Stamatakis Systematic biology 62 (1), 162-166, 2013	265	2013

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