| Joint analysis of miRNA and mRNA expression data A Muniategui, J Pey, FJ Planes, A Rubio Briefings in bioinformatics 14 (3), 263-278, 2013 | 128 | 2013 |
| Exploring metabolic pathways in genome-scale networks via generating flux modes A Rezola, LF de Figueiredo, M Brock, J Pey, A Podhorski, C Wittmann, ... Bioinformatics 27 (4), 534-540, 2011 | 68 | 2011 |
| Path finding methods accounting for stoichiometry in metabolic networks J Pey, J Prada, JE Beasley, FJ Planes Genome biology 12, 1-14, 2011 | 52 | 2011 |
| Advances in network-based metabolic pathway analysis and gene expression data integration A Rezola, J Pey, L Tobalina, Á Rubio, JE Beasley, FJ Planes Briefings in bioinformatics 16 (2), 265-279, 2015 | 38 | 2015 |
| Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks J Pey, FJ Planes Bioinformatics 30 (15), 2197-2203, 2014 | 38 | 2014 |
| Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data L Tobalina, R Bargiela, J Pey, FA Herbst, I Lores, D Rojo, C Barbas, ... Bioinformatics 31 (11), 1771-1779, 2015 | 34 | 2015 |
| Selection of human tissue-specific elementary flux modes using gene expression data A Rezola, J Pey, LF de Figueiredo, A Podhorski, S Schuster, A Rubio, ... Bioinformatics 29 (16), 2009-2016, 2013 | 30 | 2013 |
| Refining carbon flux paths using atomic trace data J Pey, FJ Planes, JE Beasley Bioinformatics 30 (7), 975-980, 2014 | 25 | 2014 |
| TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm J Pey, JA Villar, L Tobalina, A Rezola, JM García, JE Beasley, FJ Planes Bioinformatics 31 (6), 897-904, 2015 | 23 | 2015 |
| Direct calculation of minimal cut sets involving a specific reaction knock-out L Tobalina, J Pey, FJ Planes Bioinformatics 32 (13), 2001-2007, 2016 | 17 | 2016 |
| Assessment of FBA based gene essentiality analysis in cancer with a fast context-specific network reconstruction method L Tobalina, J Pey, A Rezola, FJ Planes PloS one 11 (5), e0154583, 2016 | 15 | 2016 |
| A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype J Pey, L Tobalina, PJ de Cisneros, FJ Planes BMC systems biology 7 (1), 1-12, 2013 | 15 | 2013 |
| Integrating tracer-based metabolomics data and metabolic fluxes in a linear fashion via Elementary Carbon Modes J Pey, A Rubio, C Theodoropoulos, M Cascante, FJ Planes Metabolic engineering 14 (4), 344-353, 2012 | 15 | 2012 |
| In-silico gene essentiality analysis of polyamine biosynthesis reveals APRT as a potential target in cancer J Pey, E San José-Eneriz, MC Ochoa, I Apaolaza, P de Atauri, A Rubio, ... Scientific reports 7 (1), 14358, 2017 | 14 | 2017 |
| In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes A Rezola, J Pey, Á Rubio, FJ Planes PLoS One 9 (8), e103998, 2014 | 13 | 2014 |
| Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways J Pey, K Valgepea, A Rubio, JE Beasley, FJ Planes BMC systems biology 7 (1), 1-12, 2013 | 9 | 2013 |
| Do elementary flux modes combine linearly at the “atomic” level? Integrating tracer-based metabolomics data and elementary flux modes J Pey, C Theodoropoulos, A Rezola, A Rubio, M Cascante, FJ Planes Biosystems 105 (2), 140-146, 2011 | 6 | 2011 |
| Exploring the connectivity structure in metabolic networks: Going beyond graphs via discrete optimization J Pey, A Rubio, P Crespo, FJ Planes, JE Beasley 2011 IEEE Statistical Signal Processing Workshop (SSP), 357-360, 2011 | 1 | 2011 |
| ELITE: Expression deconvoLution using lInear optimizaTion in bulk transcriptomics mixturEs A Antoranz, C Mackintosh, M Ortiz, J Pey bioRxiv, 2023.03. 06.531002, 2023 | | 2023 |
| ELIMINATOR: essentiality analysis using multisystem networks and integer programming A Antoranz, M Ortiz, J Pey BMC bioinformatics 23 (1), 324, 2022 | | 2022 |
Angel RubioTECNUN, Universidad de Navarra, San SebastiánVerified email at ceit.es
