Jon Pey
Cited by
Cited by
Joint analysis of miRNA and mRNA expression data
A Muniategui, J Pey, FJ Planes, A Rubio
Briefings in bioinformatics 14 (3), 263-278, 2013
Exploring metabolic pathways in genome-scale networks via generating flux modes
A Rezola, LF de Figueiredo, M Brock, J Pey, A Podhorski, C Wittmann, ...
Bioinformatics 27 (4), 534-540, 2011
Path finding methods accounting for stoichiometry in metabolic networks
J Pey, J Prada, JE Beasley, FJ Planes
Genome biology 12, 1-14, 2011
Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks
J Pey, FJ Planes
Bioinformatics 30 (15), 2197-2203, 2014
Advances in network-based metabolic pathway analysis and gene expression data integration
A Rezola, J Pey, L Tobalina, Á Rubio, JE Beasley, FJ Planes
Briefings in bioinformatics 16 (2), 265-279, 2015
Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data
L Tobalina, R Bargiela, J Pey, FA Herbst, I Lores, D Rojo, C Barbas, ...
Bioinformatics 31 (11), 1771-1779, 2015
Selection of human tissue-specific elementary flux modes using gene expression data
A Rezola, J Pey, LF de Figueiredo, A Podhorski, S Schuster, A Rubio, ...
Bioinformatics 29 (16), 2009-2016, 2013
TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm
J Pey, JA Villar, L Tobalina, A Rezola, JM García, JE Beasley, FJ Planes
Bioinformatics 31 (6), 897-904, 2015
Refining carbon flux paths using atomic trace data
J Pey, FJ Planes, JE Beasley
Bioinformatics 30 (7), 975-980, 2014
Direct calculation of minimal cut sets involving a specific reaction knock-out
L Tobalina, J Pey, FJ Planes
Bioinformatics 32 (13), 2001-2007, 2016
Assessment of FBA based gene essentiality analysis in cancer with a fast context-specific network reconstruction method
L Tobalina, J Pey, A Rezola, FJ Planes
PloS one 11 (5), e0154583, 2016
In-silico gene essentiality analysis of polyamine biosynthesis reveals APRT as a potential target in cancer
J Pey, E San José-Eneriz, MC Ochoa, I Apaolaza, P de Atauri, A Rubio, ...
Scientific reports 7 (1), 14358, 2017
In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes
A Rezola, J Pey, Á Rubio, FJ Planes
PLoS One 9 (8), e103998, 2014
A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype
J Pey, L Tobalina, J Prada J de Cisneros, FJ Planes
BMC systems biology 7, 1-12, 2013
Integrating tracer-based metabolomics data and metabolic fluxes in a linear fashion via Elementary Carbon Modes
J Pey, A Rubio, C Theodoropoulos, M Cascante, FJ Planes
Metabolic engineering 14 (4), 344-353, 2012
Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways
J Pey, K Valgepea, A Rubio, JE Beasley, FJ Planes
BMC systems biology 7, 1-12, 2013
Do elementary flux modes combine linearly at the “atomic” level? Integrating tracer-based metabolomics data and elementary flux modes
J Pey, C Theodoropoulos, A Rezola, A Rubio, M Cascante, FJ Planes
Biosystems 105 (2), 140-146, 2011
ELIMINATOR: essentiality analysis using multisystem networks and integer programming
A Antoranz, M Ortiz, J Pey
BMC bioinformatics 23 (1), 324, 2022
Exploring the connectivity structure in metabolic networks: Going beyond graphs via discrete optimization
J Pey, A Rubio, P Crespo, FJ Planes, JE Beasley
2011 IEEE Statistical Signal Processing Workshop (SSP), 357-360, 2011
Spatial multiome mapping of therapy-induced, pathological changes in glioblastoma at single-cell resolution
M Vanmechelen, P Nazari, J Beckervordersandforth, A Antoranz, ...
Brain Pathology 33, 2023
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