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Oğuzhan Beğik
Oğuzhan Beğik
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Title
Cited by
Cited by
Year
Accurate detection of m6A RNA modifications in native RNA sequences
H Liu, O Begik, MC Lucas, JM Ramirez, CE Mason, D Wiener, S Schwartz, ...
Nature communications 10 (1), 4079, 2019
3562019
Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing
O Begik, MC Lucas, LP Pryszcz, JM Ramirez, R Medina, I Milenkovic, ...
Nature biotechnology 39 (10), 1278-1291, 2021
1592021
Integrative analyses of the RNA modification machinery reveal tissue-and cancer-specific signatures
O Begik, MC Lucas, H Liu, JM Ramirez, JS Mattick, EM Novoa
Genome biology 21, 1-24, 2020
632020
m6A Modification and Implications for microRNAs
AE Erson-Bensan, O Begik
Microrna 6 (2), 97-101, 2017
582017
Molecular barcoding of native RNAs using nanopore sequencing and deep learning
MA Smith, T Ersavas, JM Ferguson, H Liu, MC Lucas, O Begik, L Bojarski, ...
Genome research 30 (9), 1345-1353, 2020
502020
EpiNano: Detection of m6A RNA Modifications Using Oxford Nanopore Direct RNA Sequencing
H Liu, O Begik, EM Novoa
RNA Modifications: Methods and Protocols, 31-52, 2021
412021
Exploring the epitranscriptome by native RNA sequencing
O Begik, JS Mattick, EM Novoa
RNA 28 (11), 1430-1439, 2022
232022
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing
O Begik, G Diensthuber, H Liu, A Delgado-Tejedor, C Kontur, AM Niazi, ...
Nature Methods 20 (1), 75-85, 2023
162023
Alternative polyadenylation patterns for novel gene discovery and classification in cancer
O Begik, M Oyken, TC Alican, T Can, AE Erson-Bensan
Neoplasia 19 (7), 574-582, 2017
162017
Hydrogen-bonded multilayers with controllable pH-induced disintegration kinetics for controlled release applications from surfaces
E Bag, O Begik, P Yusan, I Erel-Goktepe
Journal of Macromolecular Science, Part A 52 (4), 286-298, 2015
122015
Barcoding and demultiplexing Oxford Nanopore native RNA sequencing reads with deep residual learning
MA Smith, T Ersavas, JM Ferguson, H Liu, MC Lucas, O Begik, L Bojarski, ...
BioRxiv, 864322, 2019
112019
Accurate detection of m6A RNA modifications in native RNA sequences. Nat Commun 10: 4079
H Liu, O Begik, MC Lucas, JM Ramirez, CE Mason, D Wiener, S Schwartz, ...
112019
Quantitative profiling of native RNA modifications and their dynamics using nanopore sequencing
O Begik, MC Lucas, LP Pryszcz, JM Ramirez, R Medina, I Milenkovic, ...
bioRxiv, 2020.07. 06.189969, 2020
8*2020
Accurate detection of m (6) A RNA modifications in native RNA sequences. Nat Commun. 2019; 10 (1): 4079
H Liu, O Begik, MC Lucas, JM Ramirez, CE Mason, D Wiener, S Schwartz, ...
Epub 2019/09/11. https://doi. org/10.1038/s41467-019-11713-9 PMID: 31501426, 0
6
Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A-and P-sites
A Delgado-Tejedor, R Medina, O Begik, L Cozzuto, J Ponomarenko, ...
bioRxiv, 2023.03. 21.533606, 2023
22023
Enhanced detection of RNA modifications and mappability with high-accuracy nanopore RNA basecalling models
G Diensthuber, L Pryszcz, L Llovera, MC Lucas, A Delgado-Tejedor, ...
bioRxiv, 2023.11. 28.568965, 2023
12023
N6-methyladenosine modification is not a general trait of viral RNA genomes
B Baquero-Pérez, ID Yonchev, A Delgado-Tejedor, R Medina, ...
Nature Communications 15 (1), 1964, 2024
2024
Nano3P-seq Protocol
O Begik
2023
RNAseH-based ribodepletion
N Schonrock, HGS Vieira, O Begik, EM Novoa
2023
Characterising the RNA modification and polyadenylation landscape at single molecule resolution using third-generation sequencing technologies
O Begik
UNSW Sydney, 2021
2021
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