| Accurate detection of m6A RNA modifications in native RNA sequences H Liu, O Begik, MC Lucas, JM Ramirez, CE Mason, D Wiener, S Schwartz, ... Nature communications 10 (1), 4079, 2019 | 358 | 2019 |
| Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing O Begik, MC Lucas, LP Pryszcz, JM Ramirez, R Medina, I Milenkovic, ... Nature biotechnology 39 (10), 1278-1291, 2021 | 161 | 2021 |
| Integrative analyses of the RNA modification machinery reveal tissue-and cancer-specific signatures O Begik, MC Lucas, H Liu, JM Ramirez, JS Mattick, EM Novoa Genome biology 21, 1-24, 2020 | 63 | 2020 |
| m6A Modification and Implications for microRNAs AE Erson-Bensan, O Begik Microrna 6 (2), 97-101, 2017 | 58 | 2017 |
| Molecular barcoding of native RNAs using nanopore sequencing and deep learning MA Smith, T Ersavas, JM Ferguson, H Liu, MC Lucas, O Begik, L Bojarski, ... Genome research 30 (9), 1345-1353, 2020 | 50 | 2020 |
| EpiNano: Detection of m6A RNA Modifications Using Oxford Nanopore Direct RNA Sequencing H Liu, O Begik, EM Novoa RNA Modifications: Methods and Protocols, 31-52, 2021 | 41 | 2021 |
| Exploring the epitranscriptome by native RNA sequencing O Begik, JS Mattick, EM Novoa RNA 28 (11), 1430-1439, 2022 | 23 | 2022 |
| Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing O Begik, G Diensthuber, H Liu, A Delgado-Tejedor, C Kontur, AM Niazi, ... Nature Methods 20 (1), 75-85, 2023 | 16 | 2023 |
| Alternative polyadenylation patterns for novel gene discovery and classification in cancer O Begik, M Oyken, TC Alican, T Can, AE Erson-Bensan Neoplasia 19 (7), 574-582, 2017 | 16 | 2017 |
| Hydrogen-bonded multilayers with controllable pH-induced disintegration kinetics for controlled release applications from surfaces E Bag, O Begik, P Yusan, I Erel-Goktepe Journal of Macromolecular Science, Part A 52 (4), 286-298, 2015 | 12 | 2015 |
| Barcoding and demultiplexing Oxford Nanopore native RNA sequencing reads with deep residual learning MA Smith, T Ersavas, JM Ferguson, H Liu, MC Lucas, O Begik, L Bojarski, ... BioRxiv, 864322, 2019 | 11 | 2019 |
| Accurate detection of m6A RNA modifications in native RNA sequences. Nat Commun 10: 4079 H Liu, O Begik, MC Lucas, JM Ramirez, CE Mason, D Wiener, S Schwartz, ... | 11 | 2019 |
| Quantitative profiling of native RNA modifications and their dynamics using nanopore sequencing O Begik, MC Lucas, LP Pryszcz, JM Ramirez, R Medina, I Milenkovic, ... bioRxiv, 2020.07. 06.189969, 2020 | 8* | 2020 |
| Accurate detection of m (6) A RNA modifications in native RNA sequences. Nat Commun. 2019; 10 (1): 4079 H Liu, O Begik, MC Lucas, JM Ramirez, CE Mason, D Wiener, S Schwartz, ... Epub 2019/09/11. https://doi. org/10.1038/s41467-019-11713-9 PMID: 31501426, 0 | 6 | |
| Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A-and P-sites A Delgado-Tejedor, R Medina, O Begik, L Cozzuto, J Ponomarenko, ... bioRxiv, 2023.03. 21.533606, 2023 | 2 | 2023 |
| Enhanced detection of RNA modifications and mappability with high-accuracy nanopore RNA basecalling models G Diensthuber, L Pryszcz, L Llovera, MC Lucas, A Delgado-Tejedor, ... bioRxiv, 2023.11. 28.568965, 2023 | 1 | 2023 |
| N6-methyladenosine modification is not a general trait of viral RNA genomes B Baquero-Pérez, ID Yonchev, A Delgado-Tejedor, R Medina, ... Nature Communications 15 (1), 1964, 2024 | | 2024 |
| Nano3P-seq Protocol O Begik | | 2023 |
| RNAseH-based ribodepletion N Schonrock, HGS Vieira, O Begik, EM Novoa | | 2023 |
| Characterising the RNA modification and polyadenylation landscape at single molecule resolution using third-generation sequencing technologies O Begik UNSW Sydney, 2021 | | 2021 |
Eva Maria NovoaGroup LeaderVerified email at crg.eu
