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Erik van Dijk
Erik van Dijk
Postdoctoral researcher, Amsterdam UMC
Geverifieerd e-mailadres voor amsterdamumc.nl
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Jaar
The hydrophobic temperature dependence of amino acids directly calculated from protein structures
E van Dijk, A Hoogeveen, S Abeln
PLoS Comput Biol 11 (5), e1004277, 2015
1482015
Spatiotemporal regulation of clonogenicity in colorectal cancer xenografts
M van der Heijden, DM Miedema, B Waclaw, VL Veenstra, MC Lecca, ...
Proceedings of the National Academy of Sciences 116 (13), 6140-6145, 2019
642019
Chromosomal copy number heterogeneity predicts survival rates across cancers
E van Dijk, T Van Den Bosch, KJ Lenos, K El Makrini, LE Nijman, ...
Nature communications 12 (1), 3188, 2021
552021
Coarse-grained vs. atomistic simulations: realistic interaction free energies for real proteins
A May, R Pool, E van Dijk, J Bijlard, S Abeln, J Heringa, KA Feenstra
Bioinformatics, btt675, 2013
552013
The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth
JHM Van Gils, E Van Dijk, A Peduzzo, A Hofmann, N Vettore, ...
PLoS computational biology 16 (5), e1007767, 2020
422020
Consistent treatment of hydrophobicity in protein lattice models accounts for cold denaturation
E Van Dijk, P Varilly, TPJ Knowles, D Frenkel, S Abeln
Physical review letters 116 (7), 078101, 2016
402016
Chromosome 20 loss is characteristic of breast implant–associated anaplastic large cell lymphoma
GT Los-de Vries, M De Boer, E van Dijk, P Stathi, NJ Hijmering, ...
Blood, The Journal of the American Society of Hematology 136 (25), 2927-2932, 2020
392020
Computational screening of tip and stalk cell behavior proposes a role for apelin signaling in sprout progression
MM Palm, MG Dallinga, E van Dijk, I Klaassen, RO Schlingemann, ...
PloS one 11 (11), e0159478, 2016
38*2016
Molecular characterization of colorectal cancer related peritoneal metastatic disease
KJ Lenos, S Bach, L Ferreira Moreno, S Ten Hoorn, NR Sluiter, ...
Nature communications 13 (1), 4443, 2022
372022
Loss of chromosome 18q11. 2-q12. 1 is predictive for survival in patients with metastatic colorectal cancer treated with bevacizumab
E Van Dijk, HD Biesma, M Cordes, D Smeets, M Neerincx, S Das, PP Eijk, ...
Journal of Clinical Oncology 36 (20), 2052-2060, 2018
342018
Extracellular vesicle miRNA predict FDG‐PET status in patients with classical Hodgkin Lymphoma
EEE Drees, MGM Roemer, NJ Groenewegen, J Perez‐Boza, ...
Journal of extracellular vesicles 10 (9), e12121, 2021
242021
The characteristics of molten globule states and folding pathways strongly depend on the sequence of a protein
MJJ Dijkstra, WJ Fokkink, J Heringa, E van Dijk, S Abeln
Molecular Physics 116 (21-22), 3173-3180, 2018
202018
Circulating tumor DNA analysis of EGFR-mutant non-small cell lung cancer patients receiving osimertinib following previous tyrosine kinase inhibitor treatment
JJ Beagan, S Bach, RA van Boerdonk, E van Dijk, E Thunnissen, ...
Lung Cancer 145, 173-180, 2020
182020
Genomic and microenvironmental landscape of stage I follicular lymphoma, compared with stage III/IV
GT Los-de Vries, WBC Stevens, E van Dijk, C Langois-Jacques, AJ Clear, ...
Blood advances 6 (18), 5482-5493, 2022
162022
How sticky are our proteins? Quantifying hydrophobicity of the human proteome
JHM van Gils, D Gogishvili, J van Eck, R Bouwmeester, E van Dijk, ...
Bioinformatics advances 2 (1), vbac002, 2022
92022
PCR-free shallow whole genome sequencing for chromosomal copy number detection from plasma of cancer patients is an efficient alternative to the conventional PCR-based approach
JJ Beagan, EEE Drees, P Stathi, PP Eijk, L Meulenbroeks, F Kessler, ...
The Journal of Molecular Diagnostics 23 (11), 1553-1563, 2021
92021
A bioinformatics perspective on molecular classification of diffuse large B-cell lymphoma
M Mendeville, J Janssen, Y Kim, E van Dijk, D de Jong, B Ylstra
Leukemia 36 (9), 2177-2179, 2022
62022
A phase Ib/II study of regorafenib and paclitaxel in patients with beyond first-line advanced esophagogastric carcinoma (REPEAT)
CI Stroes, S Schokker, M Khurshed, SO van der Woude, RAA Mathôt, ...
Therapeutic advances in medical oncology 14, 17588359221109196, 2022
32022
SPECIFIC GENETIC ALTERATIONS CHARACTERIZE SEROMA‐AND TUMOR‐TYPE BREAST‐IMPLANT ASSOCIATED ANAPLASTIC LARGE CELL LYMPHOMA (BIA‐ALCL) AS A DISTINCT DISEASE ENTITY
B Ylstra, GT Los‐de Vries, M de Boer, E van Dijk, P Stathi, N Hijmering, ...
Hematological Oncology 37, 201-202, 2019
22019
Long-term Survival Update and Extended RAS Mutational Analysis of the CAIRO2 Trial: Addition of Cetuximab to CAPOX/Bevacizumab in Metastatic Colorectal Cancer
S Ten Hoorn, L Mol, DW Sommeijer, L Nijman, T van den Bosch, ...
Clinical Colorectal Cancer 22 (1), 67-75, 2023
12023
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Artikelen 1–20