| A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers M Quail, ME Smith, P Coupland, TD Otto, SR Harris, TR Connor, A Bertoni, ... BMC genomics 13 (1), 341, 2012 | 2705 | 2012 |
| Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ... Nucleic acids research 43 (3), e15-e15, 2015 | 1909 | 2015 |
| Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans I Comas, M Coscolla, T Luo, S Borrell, KE Holt, M Kato-Maeda, J Parkhill, ... Nature genetics 45 (10), 1176-1182, 2013 | 1271 | 2013 |
| Evolution of MRSA during hospital transmission and intercontinental spread SR Harris, EJ Feil, MTG Holden, MA Quail, EK Nickerson, N Chantratita, ... Science 327 (5964), 469-474, 2010 | 1262 | 2010 |
| Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data T Carver, SR Harris, M Berriman, J Parkhill, JA McQuillan Bioinformatics 28 (4), 464-469, 2012 | 1172 | 2012 |
| SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments AJ Page, B Taylor, AJ Delaney, J Soares, T Seemann, JA Keane, ... Microbial Genomics 2 (4), 2016 | 991 | 2016 |
| Rapid pneumococcal evolution in response to clinical interventions NJ Croucher, SR Harris, C Fraser, MA Quail, J Burton, M van der Linden, ... Science 331 (6016), 430-434, 2011 | 981 | 2011 |
| Circlator: automated circularization of genome assemblies using long sequencing reads M Hunt, N De Silva, TD Otto, J Parkhill, JA Keane, SR Harris Genome biology 16 (1), 1-10, 2015 | 881 | 2015 |
| Emergence and global spread of epidemic healthcare-associated Clostridium difficile M He, F Miyajima, P Roberts, L Ellison, DJ Pickard, MJ Martin, TR Connor, ... Nature Genetics, 2012 | 816 | 2012 |
| Evidence for several waves of global transmission in the seventh cholera pandemic A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ... Nature 477 (7365), 462-465, 2011 | 789 | 2011 |
| Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak CU Köser, MTG Holden, MJ Ellington, EJP Cartwright, NM Brown, ... New England Journal of Medicine 366 (24), 2267-2275, 2012 | 778 | 2012 |
| Whole-genome sequencing to identify transmission of <i>Mycobacterium abscessus</i> between patients with cystic fibrosis: a retrospective cohort study JM Bryant, DM Grogono, D Greaves, J Foweraker, I Roddick, T Inns, ... The Lancet, 2013 | 744 | 2013 |
| Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study SR Harris, EJP Cartwright, ME Török, MTG Holden, NM Brown, ... The Lancet Infectious Diseases 13 (2), 130-136, 2013 | 655 | 2013 |
| Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis KI Bos, KM Harkins, A Herbig, M Coscolla, N Weber, I Comas, SA Forrest, ... Nature 514 (7523), 494-497, 2014 | 644 | 2014 |
| Evolution and transmission of drug-resistant tuberculosis in a Russian population N Casali, V Nikolayevskyy, Y Balabanova, SR Harris, O Ignatyeva, ... Nature genetics 46 (3), 279-286, 2014 | 587 | 2014 |
| ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads M Hunt, AE Mather, L Sánchez-Busó, AJ Page, J Parkhill, JA Keane, ... Microbial genomics 3 (10), 2017 | 570 | 2017 |
| Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium JM Bryant, DM Grogono, D Rodriguez-Rincon, I Everall, KP Brown, ... Science 354 (6313), 751-757, 2016 | 543 | 2016 |
| Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread S David, S Reuter, SR Harris, C Glasner, T Feltwell, S Argimon, ... Nature microbiology 4 (11), 1919-1929, 2019 | 537 | 2019 |
| Phandango: an interactive viewer for bacterial population genomics J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ... Bioinformatics, btx610, 2017 | 514 | 2017 |
| A genomic portrait of the emergence, evolution and global spread of a methicillin resistant Staphylococcus aureus pandemic MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ... Genome Research, 2013 | 510 | 2013 |
Stephen BentleyWellcome Sanger InstituteVerified email at sanger.ac.uk
