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Bernard R. Brooks
Bernard R. Brooks
NIH NHLBI
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Title
Cited by
Cited by
Year
States DJ, Swaminathan S, Karplus M. CHARMM: a program for macromolecular energy, minimization, and dynamics calculations
BR Brooks, RE Bruccoleri, BD Olafson
J. comput. Chem 4 (2), 187-217, 1983
138981983
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
BR Brooks, RE Bruccoleri, BD Olafson, DJ States, S Swaminathan, ...
Journal of computational chemistry 4 (2), 187-217, 1983
12169*1983
CHARMM: the biomolecular simulation program
BR Brooks, CL Brooks III, AD Mackerell Jr, L Nilsson, RJ Petrella, B Roux, ...
Journal of computational chemistry 30 (10), 1545-1614, 2009
91472009
Constant pressure molecular dynamics simulation: The Langevin piston method
SE Feller, Y Zhang, RW Pastor, BR Brooks
The Journal of chemical physics 103 (11), 4613-4621, 1995
47901995
Advances in molecular quantum chemistry contained in the Q-Chem 4 program package
Y Shao, Z Gan, E Epifanovsky, ATB Gilbert, M Wormit, J Kussmann, ...
Molecular Physics 113 (2), 184-215, 2015
32102015
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
P Eastman, J Swails, JD Chodera, RT McGibbon, Y Zhao, KA Beauchamp, ...
PLoS computational biology 13 (7), e1005659, 2017
23122017
CHARMM: the energy function and its parameterization
AD MacKerell Jr, B Brooks, CL Brooks III, L Nilsson, B Roux, Y Won, ...
Encyclopedia of computational chemistry 1, 2002
1803*2002
New spherical‐cutoff methods for long‐range forces in macromolecular simulation
PJ Steinbach, BR Brooks
Journal of computational chemistry 15 (7), 667-683, 1994
12981994
Langevin dynamics of peptides: The frictional dependence of isomerization rates of N‐acetylalanyl‐N′‐methylamide
RJ Loncharich, BR Brooks, RW Pastor
Biopolymers: Original Research on Biomolecules 32 (5), 523-535, 1992
11691992
Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor.
B Brooks, M Karplus
Proceedings of the National Academy of Sciences 80 (21), 6571-6575, 1983
10851983
An analysis of the accuracy of Langevin and molecular dynamics algorithms
RW Pastor, BR Brooks, A Szabo
Molecular Physics 65 (6), 1409-1419, 1988
10731988
Software for the frontiers of quantum chemistry: An overview of developments in the Q-Chem 5 package
E Epifanovsky, ATB Gilbert, X Feng, J Lee, Y Mao, N Mardirossian, ...
The Journal of chemical physics 155 (8), 2021
8482021
PSI4 1.4: Open-source software for high-throughput quantum chemistry
DGA Smith, LA Burns, AC Simmonett, RM Parrish, MC Schieber, ...
The Journal of chemical physics 152 (18), 2020
7802020
Harmonic analysis of large systems. I. Methodology
BR Brooks, D Janežič, M Karplus
Journal of computational chemistry 16 (12), 1522-1542, 1995
6181995
Solvent-induced forces between two hydrophilic groups
SR Durell, BR Brooks, A Ben-Naim
The Journal of Physical Chemistry 98 (8), 2198-2202, 1994
5991994
Self-guided Langevin dynamics simulation method
X Wu, BR Brooks
Chemical Physics Letters 381 (3-4), 512-518, 2003
4972003
Normal modes for specific motions of macromolecules: application to the hinge-bending mode of lysozyme.
B Brooks, M Karplus
Proceedings of the National Academy of Sciences 82 (15), 4995-4999, 1985
4701985
Effect of electrostatic force truncation on interfacial and transport properties of water
SE Feller, RW Pastor, A Rojnuckarin, S Bogusz, BR Brooks
The Journal of Physical Chemistry 100 (42), 17011-17020, 1996
4581996
Computer simulation of liquid/liquid interfaces. I. Theory and application to octane/water
Y Zhang, SE Feller, BR Brooks, RW Pastor
The Journal of chemical physics 103 (23), 10252-10266, 1995
4571995
Interactions between hydrophobic and ionic solutes in aqueous guanidinium chloride and urea solutions: lessons for protein denaturation mechanism
EP O'Brien, RI Dima, B Brooks, D Thirumalai
Journal of the American Chemical Society 129 (23), 7346-7353, 2007
4182007
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