| Retrospective Validation of a Metagenomic Sequencing Protocol for Combined Detection of RNA and DNA Viruses Using Respiratory Samples from Pediatric Patients S van Boheemen, AL van Rijn, N Pappas, EC Carbo, RHP Vorderman, ... The Journal of Molecular Diagnostics 22 (2), 196-207, 2020 | 68 | 2020 |
| The respiratory virome and exacerbations in patients with chronic obstructive pulmonary disease AL Van Rijn, S Van Boheemen, I Sidorov, EC Carbo, N Pappas, H Mei, ... PloS one 14 (10), e0223952, 2019 | 56 | 2019 |
| Taxonomic classification and abundance estimation using 16S and WGS—A comparison using controlled reference samples L Khachatryan, RH de Leeuw, MEM Kraakman, N Pappas, M te Raa, ... Forensic Science International: Genetics 46, 102257, 2020 | 37 | 2020 |
| Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants J Ferreira de Carvalho, C Oplaat, N Pappas, M Derks, D de Ridder, ... BMC genomics 17 (1), 1-13, 2016 | 28 | 2016 |
| Cyanobacteria of Greece: an annotated checklist S Gkelis, I Ourailidis, M Panou, N Pappas Biodiversity Data Journal, 2016 | 28 | 2016 |
| Virus bioinformatics N Pappas, S Roux, M Hölzer, K Lamkiewicz, F Mock, M Marz, BE Dutilh Encyclopedia of virology, 124, 2021 | 17 | 2021 |
| Growth rate is a dominant factor predicting the rhizosphere effect JL López, A Fourie, SWM Poppeliers, N Pappas, JJ Sánchez-Gil, ... The ISME Journal, 1-10, 2023 | 10 | 2023 |
| Benchmarking Bioinformatic Virus Identification Tools Using Real-World Metagenomic Data across Biomes LY Wu, N Pappas, Y Wijesekara, G Piedade, CPD Brussaard, BE Dutilh bioRxiv, 2023.04. 26.538077, 2023 | 9 | 2023 |
| Performance of five metagenomic classifiers for virus pathogen detection using respiratory samples from a clinical cohort EC Carbo, IA Sidorov, AL van Rijn-Klink, N Pappas, S van Boheemen, ... Pathogens 11 (3), 340, 2022 | 7 | 2022 |
| vant Hof, PJ; Mei, H.; Claas, EC; Kroes, AC; et al. Retrospective Validation of a Metagenomic Sequencing Protocol for Combined Detection of RNA and DNA Viruses Using … S van Boheemen, AL van Rijn, N Pappas, EC Carbo, RH Vorderman, ... J. Mol. Diagn 22, 196-207, 2020 | 6 | 2020 |
| Finding functional associations between prokaryotic virus orthologous groups: a proof of concept N Pappas, BE Dutilh BMC bioinformatics 22, 1-11, 2021 | 4 | 2021 |
| Copiotrophs dominate rhizosphere microbiomes and growth rate potential is a major factor explaining the rhizosphere effect JL López, N Pappas, SWM Poppeliers, JJ Sanchez-Gil, A Fourie-Fouche, ... bioRxiv, 2022.11. 24.517860, 2022 | 1 | 2022 |
| METAGENOMIC SEQUENCING FOR COMBINED DETECTION OF RNA AND DNA VIRUSES IN RESPIRATORY SAMPLES FROM PAEDIATRIC PATIENTS S van Boheemen, AL van Rijn-Klink, N Pappas, EC Carbo, ... bioRxiv, 492835, 2018 | 1 | 2018 |
| Integration of taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes E Hauptfeld, N Pappas, S van Iwaarden, BL Snoek, A Aldas-Vargas, ... bioRxiv, 2023.03. 22.533753, 2023 | | 2023 |
