Petr Novak
Petr Novak
Research Scientist
Verified email at umbr.cas.cz - Homepage
Title
Cited by
Cited by
Year
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
P Novák, P Neumann, J Pech, J Steinhaisl, J Macas
Bioinformatics 29 (6), 792-793, 2013
4882013
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
P Novák, P Neumann, J Macas
BMC bioinformatics 11 (1), 1-12, 2010
3872010
Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences
MM Martis, S Klemme, AM Banaei-Moghaddam, FR Blattner, J Macas, ...
Proceedings of the National Academy of Sciences 109 (33), 13343-13346, 2012
1852012
Repeatless and repeat-based centromeres in potato: implications for centromere evolution
Z Gong, Y Wu, A Koblížková, GA Torres, K Wang, M Iovene, P Neumann, ...
The Plant Cell 24 (9), 3559-3574, 2012
1772012
Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived …
S Renny-Byfield, M Chester, A Kovařík, SC Le Comber, MA Grandbastien, ...
Molecular biology and evolution 28 (10), 2843-2854, 2011
1502011
Agglomerative epigenetic aberrations are a common event in human breast cancer
P Novak, T Jensen, MM Oshiro, GS Watts, CJ Kim, BW Futscher
Cancer research 68 (20), 8616, 2008
1482008
Analysis of Global and Absorption, Distribution, Metabolism, and Elimination Gene Expression in the Progressive Stages of Human Nonalcoholic Fatty Liver Disease
AD Lake, P Novak, CD Fisher, JP Jackson, RN Hardwick, DD Billheimer, ...
Drug Metabolism and Disposition 39 (10), 1954-1960, 2011
1402011
Epigenetic remodeling during arsenical-induced malignant transformation
TJ Jensen, P Novak, KE Eblin, AJ Gandolfi, BW Futscher
Carcinogenesis 29 (8), 1500-1508, 2008
1312008
Epigenetic inactivation of the HOXA gene cluster in breast cancer
P Novak, T Jensen, MM Oshiro, RJ Wozniak, M Nouzova, GS Watts, ...
Cancer research 66 (22), 10664-10670, 2006
1292006
A reference genome for pea provides insight into legume genome evolution
J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie, G Aubert, PE Bayer, ...
Nature Genetics 51 (9), 1411-1422, 2019
1272019
TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads
P Novák, L Ávila Robledillo, A Koblížková, I Vrbová, P Neumann, J Macas
Nucleic acids research 45 (12), e111-e111, 2017
1242017
Stepwise DNA methylation changes are linked to escape from defined proliferation barriers and mammary epithelial cell immortalization
P Novak, TJ Jensen, JC Garbe, MR Stampfer, BW Futscher
Cancer research 69 (12), 5251, 2009
1212009
Branched chain amino acid metabolism profiles in progressive human nonalcoholic fatty liver disease
AD Lake, P Novak, P Shipkova, N Aranibar, DG Robertson, MD Reily, ...
Amino acids 47 (3), 603-615, 2015
1182015
Decreased hepatotoxic bile acid composition and altered synthesis in progressive human nonalcoholic fatty liver disease
AD Lake, P Novak, P Shipkova, N Aranibar, D Robertson, MD Reily, Z Lu, ...
Toxicology and applied pharmacology 268 (2), 132-140, 2013
1182013
In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae
J Macas, P Novak, J Pellicer, J Čížková, A Koblížková, P Neumann, ...
PloS one 10 (11), e0143424, 2015
1102015
The adaptive endoplasmic reticulum stress response to lipotoxicity in progressive human nonalcoholic fatty liver disease
AD Lake, P Novak, RN Hardwick, B Flores-Keown, F Zhao, WT Klimecki, ...
toxicological sciences 137 (1), 26-35, 2014
1092014
Next generation sequencing-based analysis of repetitive DNA in the model dioceous plant Silene latifolia
J Macas, E Kejnovský, P Neumann, P Novák, A Koblížková, B Vyskot
PloS one 6 (11), e27335, 2011
1092011
Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size
LJ Kelly, S Renny‐Byfield, J Pellicer, J Macas, P Novák, P Neumann, ...
New Phytologist 208 (2), 596-607, 2015
1012015
Stretching the rules: monocentric chromosomes with multiple centromere domains
P Neumann, A Navrátilová, E Schroeder-Reiter, A Koblížková, ...
PLoS genetics 8 (6), e1002777, 2012
1012012
Diploidization and genome size change in allopolyploids is associated with differential dynamics of low‐and high‐copy sequences
S Renny‐Byfield, A Kovarik, LJ Kelly, J Macas, P Novak, MW Chase, ...
The Plant Journal 74 (5), 829-839, 2013
942013
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