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Jurgen Nijkamp
Jurgen Nijkamp
Heineken
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De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial …
JF Nijkamp, M van den Broek, E Datema, S de Kok, L Bosman, MA Luttik, ...
Microbial Cell Factories 11, 1-17, 2012
2592012
Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae
B Oud, V Guadalupe-Medina, JF Nijkamp, D de Ridder, JT Pronk, ...
Proceedings of the National Academy of Sciences 110 (45), E4223-E4231, 2013
1012013
De novo detection of copy number variation by co-assembly
JF Nijkamp, MA van den Broek, JMA Geertman, MJT Reinders, ...
Bioinformatics 28 (24), 3195-3202, 2012
942012
Chromosomal copy number variation in Saccharomyces pastorianus is evidence for extensive genome dynamics in industrial lager brewing strains
M Van den Broek, I Bolat, JF Nijkamp, E Ramos, MAH Luttik, F Koopman, ...
Applied and environmental microbiology 81 (18), 6253-6267, 2015
782015
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies
AA Gritsenko, JF Nijkamp, MJT Reinders, D Ridder
Bioinformatics 28 (11), 1429-1437, 2012
702012
Laboratory evolution of new lactate transporter genes in a jen1Δ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole‐genome resequencing and …
S Kok, JF Nijkamp, B Oud, FC Roque, D Ridder, JM Daran, JT Pronk, ...
FEMS Yeast Research, 2012
662012
Integrating genome assemblies with MAIA
J Nijkamp, W Winterbach, M Van den Broek, JM Daran, M Reinders, ...
Bioinformatics 26 (18), i433-i439, 2010
572010
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold
JF Nijkamp, M Pop, MJT Reinders, D de Ridder
Bioinformatics 29 (22), 2826-2834, 2013
352013
Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger
BA Van Den Berg, JF Nijkamp, MJT Reinders, L Wu, HJ Pel, JA Roubos, ...
Pattern Recognition in Bioinformatics: 5th IAPR International Conference …, 2010
52010
Powdery mildew resistance genes in carrot
AD Haarsma, WA Zwaan, JF Nijkamp, JP Martinus, PA Dekker, ...
US Patent 10,704,058, 2020
2020
Algorithms for sequence-based reverse metabolic engineering
JF Nijkamp
Delft University of Technology, 2013
2013
Laboratory evolution of new lactate transporter genes in a jen1¿ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and …
MA van den Broek, S de Kok, JF Nijkamp, B Oud, F Roque, D de Ridder, ...
5th Conference on Physiology of Yeast and Filamentous Fungi, 2013
2013
A classifier approach to predict protein secretion in Aspergillus niger
B van den Berg, J Nijkamp, M Reinders, H Pel, L Wu, J Roubos
ISMB 2010, 2010
2010
Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger
BA Berg, JF Nijkamp, MJT Reinders, L Wu, HJ Pel, JA Roubos, D Ridder
Pattern Recognition in Bioinformatics, 0
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Artikelen 1–14