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Ramon Goni
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Parmbsc1: a refined force field for DNA simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ...
Nature methods 13 (1), 55-58, 2016
9032016
Molecular dynamics simulations: advances and applications
A Hospital, JR Goņi, M Orozco, JL Gelpí
Advances and Applications in Bioinformatics and Chemistry, 37-47, 2015
6152015
Triplex‐forming oligonucleotide target sequences in the human genome
JR Goņi, X de la Cruz, M Orozco
Nucleic acids research 32 (1), 354-360, 2004
2102004
Determining promoter location based on DNA structure first-principles calculations
JR Goņi, A Pérez, D Torrents, M Orozco
Genome biology 8 (12), R263, 2007
1632007
The qPCR data statistical analysis
R Goni, P García, S Foissac
Integromics White Paper 1, 1-9, 2009
1322009
Genome-wide Analysis of the Emigrant Family of MITEs of Arabidopsis thaliana
N Santiago, C Herráiz, JR Goņi, X Messeguer, JM Casacuberta
Molecular biology and evolution 19 (12), 2285-2293, 2002
1042002
Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions
JR Goņi, JM Vaquerizas, J Dopazo, M Orozco
BMC genomics 7, 1-10, 2006
842006
Similar gene expression profiles in smokers and patients with moderate COPD
L Llinās, VI Peinado, JR Goņi, R Rabinovich, S Pizarro, ...
Pulmonary pharmacology & therapeutics 24 (1), 32-41, 2011
652011
BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data
A Hospital, P Andrio, C Cugnasco, L Codo, Y Becerra, PD Dans, ...
Nucleic acids research 44 (D1), D272-D278, 2016
512016
pyPcazip: A PCA-based toolkit for compression and analysis of molecular simulation data
A Shkurti, R Goni, P Andrio, E Breitmoser, I Bethune, M Orozco, ...
SoftwareX 5, 44-50, 2016
502016
Parmbsc: a refined force field for dna simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ...
Nature 201, 5, 2016
472016
DNAlive: a tool for the physical analysis of DNA at the genomic scale
JR Goņi, C Fenollosa, A Pérez, D Torrents, M Orozco
Bioinformatics 24 (15), 1731-1732, 2008
342008
SEABED: Small molEcule activity scanner weB servicE baseD
C Fenollosa, M Oton, P Andrio, J Cortes, M Orozco, JR Goni
Bioinformatics 31 (5), 773-775, 2015
72015
Expression profiling of microglia and macrophages using novel lipidomic TaqMan (R). Array cards and TaqMan array plates
T Schild, A Ferlinz, R Goni, T Langmann, Y Walczak, S Ebert, ...
BioTechniques 46 (4), 315-317, 2009
52009
Scalable Software Services for Life Science
R Apostolov, L Axner, H Agren, E Ayugade, M Duta, JL Gelpi, J Gimenez, ...
Proceedings of 9th HealthGrid conference, 2011
32011
The< ottaĀop Frontier of Atomistic Molecular Dynamics Simulations
R Goņi, M Orozco
Theoretical and quantum chemistry at the dawn of the 21st century, 597-616, 2018
22018
ExTASY: a python-based extensible toolkit for advanced sampling and analysis in biomolecular simulation
A Shkurti, C Laughton, R Goni, I Bethune, E Breitmoser, S Jha, ...
EuroSciPy 2015, 2015
12015
Putting ExTASY in charge of an arduous computational challenge
A Shkurti, C Laughton, R Goni, I Bethune, E Breitmoser, S Jha, ...
Supercomputing 2014 (SC14), 2014
12014
SEABED: Small molEcule Activity scanner weB servicE-baseD
JR Goņi
2014
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Articles 1–19