Sam Buckberry

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Claire Trelford RobertsMatthew Flinders Professor, Flinders UniversityVerified email at flinders.edu.au
Tina Bianco-MiottoUniversity of Adelaide, Waite Research Institute & Robinson Research InstituteVerified email at adelaide.edu.au
Ryan ListerThe University of Western Australia; Harry Perkins Institute of Medical ResearchVerified email at uwa.edu.au
Jose M PoloMonash UniversityVerified email at monash.edu
Enrico PetrettoAssoc. Professor & Director @ Centre for Computational Biology of Duke-NUS Medical School, SingaporeVerified email at duke-nus.edu.sg
Owen RackhamDuke-NUS Medical SchoolVerified email at duke-nus.edu.sg
Dulce B Vargas-LandinPhD, University of Western AustraliaVerified email at research.uwa.edu.au
Shalem LeemaqzCollege of Medicine and Public Health, Flinders UniversityVerified email at flinders.edu.au
Rebecca K SimmonsUniversity of Western AustraliaVerified email at research.uwa.edu.au
Alexandra GrubmanMonash University and Australian Regenerative Medicine InstituteVerified email at monash.edu
Catriona McLeanMonash University, Alfred Hospital, MHRI, Melbourne UniversityVerified email at monash.edu
John F. OuyangPrincipal Research Scientist, Duke-NUS Medical SchoolVerified email at duke-nus.edu.sg
Alex de MendozaSenior Lecturer, Queen Mary University of London, School of Biological and Chemical SciencesVerified email at qmul.ac.uk
Stephen J. BentData61, CSIROVerified email at data61.csiro.au
Gus DekkerProfessor of Obstetrics & Gynaecology, University of AdelaideVerified email at adelaide.edu.au
Jimmy BreenTelethon Kids Institute (Adelaide Office) & Australian National UniversityVerified email at telethonkids.org.au
Daniel PoppeResearch Associate, University of Western AustraliaVerified email at uwa.edu.au
Fernando J. RosselloThe University of MelbourneVerified email at unimelb.edu.au
Amanda HighetSchool of Medicine, University of AdelaideVerified email at adelaide.edu.au
Sara Alaei ShehniMonash university / Peter MacCallum Cancer CenterVerified email at monash.edu

Sam Buckberry

Telethon Kids Institute

Verified email at telethonkids.org.au - Homepage

Bioinformatics Genomics Epigenetics Research Computing


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A single-cell atlas of entorhinal cortex from individuals with Alzheimer’s disease reveals cell-type-specific gene expression regulation A Grubman, G Chew, JF Ouyang, G Sun, XY Choo, C McLean, ... Nature Neuroscience, 1-11, 2019	316	2019
Integrative transcriptome meta-analysis reveals widespread sex-biased gene expression at the human fetal–maternal interface S Buckberry, T Bianco-Miotto, SJ Bent, GA Dekker, CT Roberts Molecular human reproduction 20 (8), 810-819, 2014	122	2014
Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming AS Knaupp, S Buckberry, J Pflueger, SM Lim, E Ford, MR Larcombe, ... Cell stem cell 21 (6), 834-845. e6, 2017	78	2017
Large scale gene expression meta-analysis reveals tissue-specific, sex-biased gene expression in humans BT Mayne, T Bianco-Miotto, S Buckberry, J Breen, V Clifton, C Shoubridge, ... Frontiers in genetics 7, 183, 2016	66	2016
Hypoxia induced HIF-1/HIF-2 activity alters trophoblast transcriptional regulation and promotes invasion AR Highet, SM Khoda, S Buckberry, S Leemaqz, T Bianco-Miotto, ... European journal of cell biology 94 (12), 589-602, 2015	64	2015
Recent progress towards understanding the role of DNA methylation in human placental development T Bianco-Miotto, BT Mayne, S Buckberry, J Breen, CMR Lopez, ... Reproduction 152 (1), R23-R30, 2016	56	2016
Reprogramming roadmap reveals route to human induced trophoblast stem cells X Liu, JF Ouyang, FJ Rossello, JP Tan, KC Davidson, DS Valdes, ... Nature 586 (7827), 101-107, 2020	51	2020
Imprinted and X-linked non-coding RNAs as potential regulators of human placental function S Buckberry, T Bianco-Miotto, CT Roberts epigenetics 9 (1), 81-89, 2014	42	2014
Quantitative Allele-Specific Expression and DNA Methylation Analysis of H19, IGF2 and IGF2R in the Human Placenta across Gestation Reveals H19 Imprinting … S Buckberry, T Bianco-Miotto, S Hiendleder, CT Roberts PLoS One 7 (12), e51210, 2012	42	2012
Cell type of origin dictates the route to pluripotency CM Nefzger, FJ Rossello, J Chen, X Liu, AS Knaupp, J Firas, JM Paynter, ... Cell reports 21 (10), 2649-2660, 2017	41	2017
Transcriptional signature in microglia associated with Aβ plaque phagocytosis A Grubman, XY Choo, G Chew, JF Ouyang, G Sun, NP Croft, FJ Rossello, ... Nature communications 12 (1), 1-22, 2021	40*	2021
Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons A De Mendoza, A Bonnet, DB Vargas-Landin, N Ji, H Li, F Yang, L Li, ... Nature communications 9 (1), 1-11, 2018	34	2018
Convergent evolution of a vertebrate-like methylome in a marine sponge A de Mendoza, WL Hatleberg, K Pang, S Leininger, O Bogdanovic, ... Nature ecology & evolution 3 (10), 1464-1473, 2019	33	2019
Zinc is a critical regulator of placental morphogenesis and maternal hemodynamics during pregnancy in mice RL Wilson, SY Leemaqz, Z Goh, D McAninch, T Jankovic-Karasoulos, ... Scientific reports 7 (1), 1-14, 2017	27	2017
Vitamin D receptor gene ablation in the conceptus has limited effects on placental morphology, function and pregnancy outcome RL Wilson, S Buckberry, F Spronk, JA Laurence, S Leemaqz, S O’Leary, ... PloS one 10 (6), e0131287, 2015	27	2015
Transcriptome profiling reveals expression signatures of cranial neural crest cells arising from different axial levels R Lumb, S Buckberry, G Secker, D Lawrence, Q Schwarz BMC Developmental Biology 17 (1), 1-12, 2017	26	2017
The emergence of the brain non-CpG methylation system in vertebrates A de Mendoza, D Poppe, S Buckberry, J Pflueger, CB Albertin, T Daish, ... Nature ecology & evolution 5 (3), 369-378, 2021	24	2021
massiR : a method for predicting the sex of samples in gene expression microarray datasets S Buckberry, SJ Bent, T Bianco-Miotto, CT Roberts Bioinformatics 30 (14), 2084-2085, 2014	24	2014
First trimester trophoblasts forming endothelial-like tubes in vitro emulate a ‘blood vessel development’gene expression profile AR Highet, S Buckberry, BT Mayne, SM Khoda, T Bianco-Miotto, ... Gene Expression Patterns 21 (2), 103-110, 2016	23	2016
Circulating IGF1 and IGF2 and SNP genotypes in men and pregnant and non-pregnant women KL Gatford, GK Heinemann, SD Thompson, JV Zhang, S Buckberry, ... Endocrine Connections 3 (3), 138-149, 2014	20	2014

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