Sam Buckberry

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Claire Trelford RobertsMatthew Flinders Professor, Flinders UniversityVerified email at flinders.edu.au
Tina Bianco-MiottoUniversity of Adelaide, Waite Research Institute & Robinson Research InstituteVerified email at adelaide.edu.au
Ryan ListerUniversity of Western Australia; Harry Perkins Institute of Medical ResearchVerified email at uwa.edu.au
Jose M PoloMonash UniversityVerified email at monash.edu
Dulce B Vargas-LandinPhD, University of Western AustraliaVerified email at research.uwa.edu.au
Enrico PetrettoAssoc. Professor & Director @ Centre for Computational Biology of Duke-NUS Medical School, SingaporeVerified email at duke-nus.edu.sg
Owen RackhamUniversity of SouthamptonVerified email at soton.ac.uk
Rebecca K SimmonsUniversity of Western AustraliaVerified email at research.uwa.edu.au
Daniel PoppeResearch Associate, University of Western AustraliaVerified email at uwa.edu.au
Shalem LeemaqzCollege of Medicine and Public Health, Flinders UniversityVerified email at flinders.edu.au
Alex de MendozaSenior Lecturer, Queen Mary University of London, School of Biological and Behavioural SciencesVerified email at qmul.ac.uk
Alexandra GrubmanMonash University and Australian Regenerative Medicine InstituteVerified email at monash.edu
Catriona McLeanMonash University, Alfred Hospital, MHRI, Melbourne UniversityVerified email at monash.edu
John F. OuyangPrincipal Research Scientist, Duke-NUS Medical SchoolVerified email at duke-nus.edu.sg
Jimmy BreenTelethon Kids Institute (Adelaide Office) & Australian National UniversityVerified email at telethonkids.org.au
Stephen J. BentData61, CSIROVerified email at data61.csiro.au
Gus DekkerProfessor of Obstetrics & Gynaecology, University of AdelaideVerified email at adelaide.edu.au
Fernando J. RosselloThe University of MelbourneVerified email at unimelb.edu.au
Amanda HighetSchool of Medicine, University of AdelaideVerified email at adelaide.edu.au
Sara Alaei ShehniMonash university / Peter MacCallum Cancer CenterVerified email at monash.edu

Sam Buckberry

Telethon Kids Institute

Verified email at telethonkids.org.au - Homepage

Bioinformatics Genomics Epigenetics Research Computing


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A single-cell atlas of entorhinal cortex from individuals with Alzheimer’s disease reveals cell-type-specific gene expression regulation A Grubman, G Chew, JF Ouyang, G Sun, XY Choo, C McLean, ... Nature Neuroscience, 1-11, 2019	446	2019
Integrative transcriptome meta-analysis reveals widespread sex-biased gene expression at the human fetal–maternal interface S Buckberry, T Bianco-Miotto, SJ Bent, GA Dekker, CT Roberts Molecular Human Reproduction 20 (8), 810-819, 2014	135	2014
Reprogramming roadmap reveals route to human induced trophoblast stem cells X Liu, JF Ouyang, FJ Rossello, JP Tan, KC Davidson, DS Valdes, ... Nature 586 (7827), 101-107, 2020	89	2020
Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming AS Knaupp, S Buckberry, J Pflueger, SM Lim, E Ford, MR Larcombe, ... Cell stem cell 21 (6), 834-845. e6, 2017	89	2017
Large scale gene expression meta-analysis reveals tissue-specific, sex-biased gene expression in humans BT Mayne, T Bianco-Miotto, S Buckberry, J Breen, V Clifton, C Shoubridge, ... Frontiers in genetics 7, 183, 2016	86	2016
Transcriptional signature in microglia associated with Aβ plaque phagocytosis A Grubman, XY Choo, G Chew, JF Ouyang, G Sun, NP Croft, FJ Rossello, ... Nature communications 12 (1), 3015, 2021	79	2021
Hypoxia induced HIF-1/HIF-2 activity alters trophoblast transcriptional regulation and promotes invasion AR Highet, SM Khoda, S Buckberry, S Leemaqz, T Bianco-Miotto, ... European journal of cell biology 94 (12), 589-602, 2015	70	2015
Recent progress towards understanding the role of DNA methylation in human placental development T Bianco-Miotto, BT Mayne, S Buckberry, J Breen, CMR Lopez, ... Reproduction (Cambridge, England) 152 (1), R23, 2016	65	2016
Cell type of origin dictates the route to pluripotency CM Nefzger, FJ Rossello, J Chen, X Liu, AS Knaupp, J Firas, JM Paynter, ... Cell reports 21 (10), 2649-2660, 2017	48	2017
The emergence of the brain non-CpG methylation system in vertebrates A de Mendoza, D Poppe, S Buckberry, J Pflueger, CB Albertin, T Daish, ... Nature ecology & evolution 5 (3), 369-378, 2021	43	2021
Imprinted and X-linked non-coding RNAs as potential regulators of human placental function S Buckberry, T Bianco-Miotto, CT Roberts epigenetics 9 (1), 81-89, 2014	42	2014
Convergent evolution of a vertebrate-like methylome in a marine sponge A de Mendoza, WL Hatleberg, K Pang, S Leininger, O Bogdanovic, ... Nature ecology & evolution 3 (10), 1464-1473, 2019	41	2019
Quantitative Allele-Specific Expression and DNA Methylation Analysis of H19, IGF2 and IGF2R in the Human Placenta across Gestation Reveals H19 Imprinting … S Buckberry, T Bianco-Miotto, S Hiendleder, CT Roberts PLoS One 7 (12), e51210, 2012	41	2012
Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons A De Mendoza, A Bonnet, DB Vargas-Landin, N Ji, H Li, F Yang, L Li, ... Nature communications 9 (1), 1341, 2018	40	2018
Zinc is a critical regulator of placental morphogenesis and maternal hemodynamics during pregnancy in mice RL Wilson, SY Leemaqz, Z Goh, D McAninch, T Jankovic-Karasoulos, ... Scientific Reports 7 (1), 15137, 2017	31	2017
Vitamin D receptor gene ablation in the conceptus has limited effects on placental morphology, function and pregnancy outcome RL Wilson, S Buckberry, F Spronk, JA Laurence, S Leemaqz, S O’Leary, ... PloS one 10 (6), e0131287, 2015	30	2015
Transcriptome profiling reveals expression signatures of cranial neural crest cells arising from different axial levels R Lumb, S Buckberry, G Secker, D Lawrence, Q Schwarz BMC Developmental Biology 17, 1-12, 2017	28	2017
massiR : a method for predicting the sex of samples in gene expression microarray datasets S Buckberry, SJ Bent, T Bianco-Miotto, CT Roberts Bioinformatics 30 (14), 2084-2085, 2014	28	2014
Placental transcriptome co-expression analysis reveals conserved regulatory programs across gestation S Buckberry, T Bianco-Miotto, SJ Bent, V Clifton, C Shoubridge, ... BMC genomics 18, 1-13, 2017	25	2017
First trimester trophoblasts forming endothelial-like tubes in vitro emulate a ‘blood vessel development’gene expression profile AR Highet, S Buckberry, BT Mayne, SM Khoda, T Bianco-Miotto, ... Gene expression patterns 21 (2), 103-110, 2016	23	2016

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